Weekly U.S. Influenza Surveillance Report

2018-2019 Influenza Season Week 47 ending November 24, 2018

All data are preliminary and may change as more reports are received.

An overview of the CDC influenza surveillance system, including methodology and detailed descriptions of each data component, is available at http://www.cdc.gov/flu/weekly/overview.htm.,

Synopsis:

Influenza activity in the United States increased slightly. The increase in the percentage of patient visits for ILI may be influenced in part by a reduction in routine healthcare visits during the Thanksgiving holidays, as has occurred in previous seasons. Influenza A(H1N1)pdm09, influenza A(H3N2), and influenza B viruses continue to co-circulate, with influenza A(H1N1)pdm09 viruses reported most commonly by public health laboratories since September 30, 2018. Below is a summary of the key influenza indicators for the week ending November 24, 2018:

• Viral Surveillance: Influenza A viruses have predominated in the United States since the beginning of July. The percentage of respiratory specimens testing positive for influenza in clinical laboratories was low.
• Virus Characterization: The majority of influenza viruses characterized antigenically and genetically are similar to the cell-grown reference viruses representing the 2018–2019 Northern Hemisphere influenza vaccine viruses.
• Antiviral Resistance: All viruses tested since late May show susceptibility to the antiviral drugs oseltamivir, zanamivir, and peramivir.
• Influenza-like Illness Surveillance: The proportion of outpatient visits for influenza-like illness (ILI) increased to 2.3%, which is above the national baseline of 2.2%. Five of 10 regions reported ILI at or above their region-specific baseline level.
• ILI State Activity Indictor Map: Two states experienced high ILI activity; three states experienced moderate ILI activity; New York City, the District of Columbia, Puerto Rico and eight states experienced low ILI activity; and 37 states experienced minimal ILI activity.
• Geographic Spread of Influenza: The geographic spread of influenza in five states was reported as regional; 16 states reported local activity; the District of Columbia, Puerto Rico, the U.S. Virgin Islands and 28 states reported sporadic activity; and Guam and one state reported no influenza activity.
• Pneumonia and Influenza Mortality: The proportion of deaths attributed to pneumonia and influenza (P&I;) was below the system-specific epidemic threshold in the National Center for Health Statistics (NCHS) Mortality Surveillance System.
• Influenza-associated Pediatric Deaths: Two influenza-associated pediatric deaths were reported to CDC for week 47.

National and Regional Summary of Select Surveillance Components

*https://www.hhs.gov/about/agencies/iea/regional-offices/index.html
† Elevated means the % of visits for ILI is at or above the national or region-specific baseline
§ Includes all 50 states, the District of Columbia, Guam, Puerto Rico, and U.S. Virgin Islands
‡ National data are for current week; regional data are for the most recent three weeks

U.S. Virologic Surveillance:

WHO and NREVSS collaborating laboratories, which include both public health and clinical laboratories located in all 50 states, Puerto Rico, Guam, and the District of Columbia, report to CDC the total number of respiratory specimens tested for influenza and the number positive for influenza by virus type. In addition, public health laboratories also report the influenza A subtype (H1 or H3) and influenza B lineage information of the viruses they test and the age or age group of the persons from whom the specimens were collected.

Additional virologic data, including national, regional and select state-level data, can be found at: http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html. Age group proportions and totals by influenza subtype reported by public health laboratories can be found at: http://gis.cdc.gov/grasp/fluview/flu_by_age_virus.html.

The results of tests performed by clinical laboratories are summarized below.

	Week 47	Data Cumulative since September 30, 2018 (Week 40)
No. of specimens tested	16,648	153,017
No. of positive specimens (%)	397 (2.4%)	3,249 (2.1%)
Positive specimens by type
Influenza A	372 (93.7%)	2,657(81.8%)
Influenza B	25 (16.3%)	592 (18.2%)



View National and Regional Level Graphs and Data | View Chart Data | View Full Screen | View PowerPoint Presentation



The results of tests performed by public health laboratories are summarized below.

	Week 47	Data Cumulative since September 30, 2018 (Week 40)
No. of specimens tested	374	6,567
No. of positive specimens*	88	776
Positive specimens by type/subtype
Influenza A	84 (95.5%)	689 (88.8%)
(H1N1)pdm09	60 (83.3%)	497 (79.4%)
H3N2	12 (16.7%)	129 (20.6%)
Subtyping not performed	12	63
Influenza B	4 (4.5%)	87 (11.2%)
Yamagata lineage	3 (100%)	51 (75.0%)
Victoria lineage	0 (0%)	17 (25.0%)
Lineage not performed	1	19

*The percent of specimens testing positive for influenza is not reported because public health laboratories often receive samples that have already tested positive for influenza at a clinical laboratory and therefore percent positive would not be a valid indicator of influenza activity. Additional information is available at http://www.cdc.gov/flu/weekly/overview.htm.




View National and Regional Level Graphs and Data | View Chart Data | View Full Screen | View PowerPoint Presentation



Influenza Virus Characterization:

Close monitoring of influenza viruses is required to better assess the potential impact on public health. CDC characterizes influenza viruses through one or more tests including genomic sequencing, hemagglutination inhibition (HI) and/or neutralization assays based Focus Reduction assays (FRA). These data are used to compare how similar currently circulating influenza viruses are to the reference viruses used for developing new influenza vaccines and to monitor evolutionary changes that continually occur in influenza viruses circulating in humans. Antigenic and genetic characterization of circulating influenza viruses gives an indication of the influenza vaccine's ability to induce an immune response against the wide array of influenza viruses that are co-circulating every season. However, annual vaccine effectiveness estimates are needed to determine how much protection was provided to the population by vaccination.

For nearly all influenza-positive surveillance samples received at CDC, next-generation sequencing is performed to determine the genetic identity of circulating influenza viruses and to monitor the evolutionary trajectory of viruses circulating in our population. Virus gene segments are classified into genetic clades/subclades based on phylogenetic analysis. However, genetic changes that classify the clades/subclades do not always result in antigenic changes. “Antigenic drift” is a term used to describe gradual antigenic change that occurs as viruses evolve changes to escape host immune pressure. Antigenic drift is evaluated by comparing antigenic properties of cell-propagated reference viruses representing currently recommended vaccine components with those of cell-propagated circulating viruses.

CDC has antigenically or genetically characterized 338 influenza viruses collected May 20, 2018 – November 24, 2018, and submitted by U.S. laboratories, including 166 influenza A(H1N1)pdm09 viruses, 106 influenza A(H3N2) viruses, and 66 influenza B viruses.

Influenza A Viruses

• A (H1N1)pdm09: Phylogenetic analysis of the HA genes from 166 A(H1N1)pdm09 viruses showed that all belonged to clade 6B.1. Eighty-eight A(H1N1)pdm09 viruses were antigenically characterized, and all 88 (100%) were antigenically similar (analyzed using HI with ferret antisera) to A/Michigan/45/2015 (6B.1), a cell-propagated A/Michigan/45/2015-like reference virus representing the A(H1N1)pdm09 component for the 2018-19 Northern Hemisphere influenza vaccines.
• A (H3N2): Phylogenetic analysis of the HA genes from 106 A(H3N2) viruses revealed extensive genetic diversity with multiple clades/subclades co-circulating. The HA genes of circulating viruses belonged to clade 3C.2a (n=41), subclade 3C.2a1 (n=61) or clade 3C.3a (n=4). Seventy influenza A(H3N2) viruses were antigenically characterized by FRA with ferret antisera, and 65 (92.9%) A(H3N2) viruses tested were well-inhibited (reacting at titers that were within 4-fold of the homologous virus titer) by ferret antisera raised against A/Singapore/INFIMH-16-0019/2016 (3C.2a1), a cell-propagated A/Singapore/INFIMH-16-0019/2016 -like reference virus representing the A(H3N2) component of 2018-19 Northern Hemisphere influenza vaccines.



Influenza B Viruses

• B/Victoria: Phylogenetic analysis of 14 B/Victoria-lineage viruses indicate that all HA genes belonged to genetic clade V1A, however genetic subclades which are antigenically distinct have emerged. The majority of recent B/Victoria-lineage viruses belonged to a subclade of viruses with a 6-nucleotide deletion (encoding amino acids 162 and 163) in the HA (V1A.1, previously abbreviated as V1A-2Del). In addition, a small number of B/Victoria-lineage viruses have a three amino acid deletion (162-164) in the HA protein (abbreviated as V1A-3Del). Nine (69.2%) B/Victoria lineage viruses were well-inhibited by ferret antisera raised against cell-propagated B/Colorado/06/2017-like (V1A.1) reference virus, representing the B/Victoria lineage component of 2018-19 Northern Hemisphere influenza vaccines. Four (30.8%) B/Victoria lineage virus reacted poorly (at titers that were 8-fold or greater reduced compared with the homologous virus titer) with ferret antisera raised against cell-propagated B/Colorado/06/2017-like reference virus, and belonged to clade V1A.
• B/Yamagata: Phylogenetic analysis of 52 influenza B/Yamagata-lineage viruses indicate that the HA genes belonged to clade Y3. A total of 48 influenza B/Yamagata-lineage viruses were antigenically characterized, and all were antigenically similar to cell-propagated B/Phuket/3073/2013 (Y3), the reference vaccine virus representing the influenza B/Yamagata-lineage component of the 2018-19 Northern Hemisphere quadrivalent vaccines.

The majority of U.S. viruses submitted for characterization come from state and local public health laboratories. Due to Right Size Roadmap considerations, specimen submission guidance to laboratories is that, if available, 2 influenza A(H1N1)pdm09, 2 influenza A(H3N2), and 2 influenza B viruses be submitted every other week. Therefore, the numbers of each virus type/subtype characterized should be more balanced across subtypes/lineages but will not reflect the actual proportion of circulating viruses. In the figure below, the results of tests performed by public health labs are shown on the left and CDC sequence results (by genetic clade/subclade) are shown on the right.



View Chart Data | View Full Screen | View PowerPoint Presentation

Antiviral Resistance:

During May 20-November 24, 2018, 173 specimens (72 influenza A(H1N1)pdm09, 57 influenza A(H3N2), and 44 influenza B viruses) collected in the United States were tested for susceptibility to the neuraminidase inhibitors (oseltamivir, zanamivir, and peramivir). All tested viruses were sensitive to all three recommended antiviral medications.

While all of the recently circulating influenza viruses are susceptible to the neuraminidase inhibitor antiviral medications oseltamivir, zanamivir, and peramivir; rare sporadic instances of oseltamivir-resistant and peramivir-resistant influenza A(H1N1)pdm09 viruses and oseltamivir-resistant influenza A(H3N2) viruses have been detected worldwide. Antiviral treatment as early as possible is recommended for patients with confirmed or suspected influenza who have severe, complicated, or progressive illness; who require hospitalization; or who are at high risk for serious influenza-related complications. Additional information on recommendations for treatment and chemoprophylaxis of influenza virus infection with antiviral agents is available at http://www.cdc.gov/flu/antivirals/index.htm.





Outpatient Illness Surveillance:

Nationwide during week 47, 2.3% of patient visits reported through the U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet) were due to influenza-like illness (ILI). This percentage is above the national baseline of 2.2%.(ILI is defined as fever (temperature of 100°F [37.8°C] or greater) and cough and/or sore throat.)

On a regional level, the percentage of outpatient visits for ILI ranged from 1.0% to 3.5% during week 47. Five of 10 regions (Regions 2, 4, 7, 8 and 9) reported a percentage of outpatient visits for ILI at or above their region-specific baseline.

The increase in the percentage of patient visits for ILI may be influenced in part by a reduction in routine healthcare visits during the Thanksgiving holidays, as has occurred in previous seasons.

Additional data on medically attended visits for ILI for current and past seasons and by geography (national, HHS region, or select states) are available on FluView Interactive http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html.


View National and Regional Level Graphs and Data | View Chart Data | View Full Screen | View PowerPoint Presentation






ILINet State Activity Indicator Map:

Data collected in ILINet are used to produce a measure of ILI activity* by state. Activity levels are based on the percent of outpatient visits in a state due to ILI and are compared to the average percent of ILI visits that occur during weeks with little or no influenza virus circulation. Activity levels range from minimal, which would correspond to ILI activity from outpatient clinics being below, or only slightly above, the average, to high, which would correspond to ILI activity from outpatient clinics being much higher than average.

The ILI Activity Indicator Map displays state-specific activity levels for multiple seasons and allows a visual representation of relative activity from state to state. More information is available on FluView Interactive at https://gis.cdc.gov/grasp/fluview/main.html.

During week 47, the following ILI activity levels were experienced:

• Two states (Georgia and Louisiana) experienced high ILI activity.
• Three states (Alabama, Oklahoma, and Utah) experienced moderate ILI activity.
• New York City, the District of Columbia, Puerto Rico and eight states (Arizona, Arkansas, Colorado, Kentucky, Mississippi, New Jersey, South Carolina, and Virginia) experienced low ILI activity.
• 37 states (Alaska, California, Connecticut, Delaware, Florida, Hawaii, Idaho, Illinois, Indiana, Iowa, Kansas, Maine, Maryland, Massachusetts, Michigan, Minnesota, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Mexico, New York, North Carolina, North Dakota, Ohio, Oregon, Pennsylvania, Rhode Island, South Dakota, Tennessee, Texas, Vermont, Washington, West Virginia, Wisconsin, and Wyoming) experienced minimal ILI activity.

*This map uses the proportion of outpatient visits to health care providers for ILI to measure the ILI activity level within a state. It does not, however, measure the extent of geographic spread of flu within a state. Therefore, outbreaks occurring in a single city could cause the state to display high activity levels.
Data collected in ILINet may disproportionally represent certain populations within a state, and therefore, may not accurately depict the full picture of influenza activity for the whole state.
Data displayed in this map are based on data collected in ILINet, whereas the State and Territorial flu activity map is based on reports from state and territorial epidemiologists. The data presented in this map are preliminary and may change as more data are received.
Differences in the data presented here by CDC and independently by some state health departments likely represent differing levels of data completeness with data presented by the state likely being the more complete.





Geographic Spread of Influenza as Assessed by State and Territorial Epidemiologists

The influenza activity reported by state and territorial epidemiologists indicates geographic spread of influenza viruses, but does not measure the severity of influenza activity. Additional data displaying the influenza activity reported by state and territorial epidemiologists for the current and past seasons are available on FluView Interactive at https://gis.cdc.gov/grasp/fluview/FluView8.html

During week 47, the following influenza activity was reported:

• Regional influenza activity was reported by five states (Connecticut, Kentucky, Massachusetts, Oregon, and Utah).
• Local influenza activity was reported by 16 states (Alaska, Arizona, California, Florida, Georgia, Idaho, Louisiana, New Hampshire, New Jersey, New York, Ohio, Oklahoma,  Pennsylvania, South Carolina, Tennessee, and Texas).
• Sporadic influenza activity was reported by the District of Columbia, Puerto Rico, the U.S. Virgin Islands and 28 states (Alabama, Arkansas, Colorado, Delaware, Hawaii, Illinois, Indiana, Iowa, Kansas, Maine, Maryland, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Mexico, North Carolina, North Dakota, Rhode Island, South Dakota, Vermont, Washington, West Virginia, Wisconsin, and Wyoming).
• No influenza activity was reported by Guam and one state (Virginia).



Influenza-Associated Hospitalizations:

The Influenza Hospitalization Surveillance Network (FluSurv-NET) conducts all age population-based surveillance for laboratory-confirmed influenza-related hospitalizations in select counties in the Emerging Infections Program (EIP) states and Influenza Hospitalization Surveillance Project (IHSP) states. FluSurv-NET estimated hospitalization rates will be updated weekly starting later this season.  Additional FluSurv-NET data can be found at: http://gis.cdc.gov/GRASP/Fluview/FluHospRates.html and http://gis.cdc.gov/grasp/fluview/FluHospChars.html.




Pneumonia and Influenza (P&I) Mortality Surveillance:

Based on National Center for Health Statistics (NCHS) mortality surveillance data available on November 29, 2018, 5.8% of the deaths occurring during the week ending November 17, 2018 (week 46) were due to P&I. This percentage is below the epidemic threshold of 6.4% for week 46.

Additional pneumonia and influenza mortality data for current and past seasons and by geography (national, HHS region, or state) are available at on FluView Interactive http://gis.cdc.gov/grasp/fluview/mortality.html. Data displayed on the regional and state-level are aggregated by the state of residence of the decedent.


View Regional and State Level Data | View Chart Data | View Full Screen | View PowerPoint Presentation



Influenza-Associated Pediatric Mortality:

Two influenza-associated pediatric deaths were reported to CDC during week 47.  One death was associated with an influenza A(H1N1)pdm09 virus and occurred during week 46 (the week ending November 17, 2018) and one death was associated with an influenza A(H3) virus and occurred during week 47 (the week ending November 24, 2018).

A total of five influenza-associated pediatric deaths have been reported for the 2018-2019 season.

Additional information on influenza-associated pediatric deaths including basic demographics, underlying conditions, bacterial co-infections, and place of death for the current and past seasons, is available on FluView Interactive http://gis.cdc.gov/GRASP/Fluview/PedFluDeath.html.



View Interactive Application | View Full Screen | View PowerPoint Presentation



Additional National and International Influenza Surveillance Information




FluView Interactive: FluView includes enhanced web-based interactive applications that can provide dynamic visuals of the influenza data collected and analyzed by CDC. These FluView Interactive applications allow people to create customized, visual interpretations of influenza data, as well as make comparisons across flu seasons, regions, age groups and a variety of other demographics. To access these tools, visit http://www.cdc.gov/flu/weekly/fluviewinteractive.htm.

U.S. State and local influenza surveillance: Click on a jurisdiction below to access the latest local influenza information.

Alabama	Alaska	Arizona	Arkansas	California
Colorado	Connecticut	Delaware	District of Columbia	Florida
Georgia	Hawaii	Idaho	Illinois	Indiana
Iowa	Kansas	Kentucky	Louisiana	Maine
Maryland	Massachusetts	Michigan	Minnesota	Mississippi
Missouri	Montana	Nebraska	Nevada	New Hampshire
New Jersey	New Mexico	New York	North Carolina	North Dakota
Ohio	Oklahoma	Oregon	Pennsylvania	Rhode Island
South Carolina	South Dakota	Tennessee	Texas	Utah
Vermont	Virginia	Washington	West Virginia	Wisconsin
Wyoming	New York City	Puerto Rico	Virgin Islands





World Health Organization: Additional influenza surveillance information from participating WHO member nations is available through FluNet and the Global Epidemiology Reports.

WHO Collaborating Centers for Influenza located in Australia, China, Japan, the United Kingdom, and the United States (CDC in Atlanta, Georgia).

Europe: For the most recent influenza surveillance information from Europe, please see WHO/Europe and the European Centre for Disease Prevention and Control at http://www.flunewseurope.org/.

Public Health Agency of Canada: The most up-to-date influenza information from Canada is available at http://www.phac-aspc.gc.ca/fluwatch/

Public Health England: The most up-to-date influenza information from the United Kingdom is available at https://www.gov.uk/government/statistics/weekly-national-flu-reports




Any links provided to non-Federal organizations are provided solely as a service to our users. These links do not constitute an endorsement of these organizations or their programs by CDC or the Federal Government, and none should be inferred. CDC is not responsible for the content of the individual organization web pages found at these links.

An overview of the CDC influenza surveillance system, including methodology and detailed descriptions of each data component, is available at: http://www.cdc.gov/flu/weekly/overview.htm.

--------------------------------------------------------------------------------