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Tides and Inflows in the Mangrove Ecotone (TIME) Model Development

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Metadata:


Identification_Information:
Citation:
Citation_Information:
Originator:
Harry Jenter

Kevin Kotun (ENP)

Publication_Date: Unknown
Title:
Tides and Inflows in the Mangrove Ecotone (TIME) Model Development
Online_Linkage: <http://sofia.usgs.gov/projects/time/>
Online_Linkage: <http://time.er.usgs.gov/>
Description:
Abstract:
The Tides and Inflows in the Mangrove Ecotone (TIME) project entails a study of the transition region using a coupled surface-water/groundwater model and the collection and analysis of data in support of that modeling effort. This project entails incorporation, into the TIME surface-water model, the understandings gleaned from the Southern and Inland Coastal Systems (SICS) study conducted in the Taylor Slough and C-111 Canal basins of Everglades National Park. Specifically, vegetative resistance and meteorological forcing process-study results are being incorporated into the TIME model. Because of the high demand for data in the parameterization of these results, this project also involves the assembly, storage and distribution of all time-variable data sets used to drive, calibrate and test the TIME surface-water model.

The TIME Model Development project is focused on further developing, extending and implementing a mathematical model to study the interaction between wetland sheet flows and dynamic forces in the transition zone between the southern Everglades and its coastal embayments. The model will be used to study and evaluate the combined response of hydroperiods in the wetlands and salinities in the mangrove ecotone to inflow alterations.

The major product of the TIME Model Development project will be a sound, physically-based, fine-resolution (500m) model of the Everglades National Park area of the Everglades consistent with the Across Trophic Level System Simulation models that can be used as a research tool and management model to study and evaluate ecosystem response to regulatory decisions. Through analysis of model results for varied inflows, cause and effect relationships to ecosystem functions and sustainability can be investigated to evaluate and guide restoration actions. Any external dynamic factors that could adversely affect restoration objectives can be identified and demonstrated. Data collected in support of the model development will be made available for dissemination via the Internet and scientific findings will be reported in traditional peer-reviewed literature as appropriate.

Purpose:
A critical objective of the south Florida ecosystem restoration effort is to create and preserve ecological conditions that are consistent with habitat requirements. Two of the most important requirements for restoration success are an understanding of wetland hydroperiods and coastal embayment salinities. Hydroperiods in the southern Everglades, including duration, timing and extent of wetland inundation, have been distorted substantially in the past as evidenced by observed shifts in zoological and vegetative species. Similarly, embayment salinities have been altered with dramatic ecological effects.

Both regulatory and natural factors contribute to the definition of hydroperiods and salinities, making their precise evaluation and management difficult. The understanding and control of hydroperiods and salinities becomes even more problematic in the mangrove ecotone, the transition zone between the Everglades wetlands and coastal embayments where hydroperiods and salinities are inextricably linked and the mixing of fresh and salt water cannot be ignored. In this region, coastal tides, wetland flows and upstream inflows must be considered concurrently for an accurate understanding of their effects.

Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 19991001
Ending_Date: 20040930
Currentness_Reference: ground condition
Status:
Progress: In Work
Maintenance_and_Update_Frequency: As needed
Spatial_Domain:
Bounding_Coordinates:
West_Bounding_Coordinate: -81.555039
East_Bounding_Coordinate: -80.304809
North_Bounding_Coordinate: 25.976713
South_Bounding_Coordinate: 25.026572
Keywords:
Theme:
Theme_Keyword_Thesaurus: none
Theme_Keyword: hydrology
Theme_Keyword: salinity
Theme_Keyword: flow
Theme_Keyword: model
Theme_Keyword: mangrove ecotone
Theme_Keyword: hydroperiods
Theme_Keyword: saltwater-freshwater interface zone
Theme_Keyword: transition zone
Theme_Keyword: SICS
Theme_Keyword: Southern Inland and Coastal Systems
Theme_Keyword: TIME
Theme_Keyword: Tides and Inflows in the Mangrove Ecotone
Theme:
Theme_Keyword_Thesaurus:
Geographic Data - Metadata, ISO 19115:2003(E), TopicCategoryCode, 2003, International Organization for Standardization (ISO), Geneva, Switzerland
Theme_Keyword: environment
Theme_Keyword: inlandWaters
Theme_Keyword: oceans
Theme_Keyword: 007
Theme_Keyword: 012
Theme_Keyword: 014
Place:
Place_Keyword_Thesaurus:
Department of Commerce, 1995, Countries, Dependencies, Areas of Special Sovereignty, and Their Principal Administrative Divisions, Federal Information Processing Standard (FIPS) 10-4, Washington, D.C., National Institute of Standards and Technology
Place_Keyword: United States
Place_Keyword: US
Place:
Place_Keyword_Thesaurus:
U.S. Department of Commerce, 1987, Codes for the identification of the States, the District of Columbia and the outlying areas of the United States, and associated areas (Federal Information Processing Standard 5-2): Washington, D. C., NIST
Place_Keyword: Florida
Place_Keyword: FL
Place:
Place_Keyword_Thesaurus:
Department of Commerce, 1990, Counties and Equivalent Entities of the United States, Its Possessions, and Associated Areas, FIPS 6-3, Washington, DC, National Institute of Standards and Technology
Place_Keyword: Collier County
Place_Keyword: Miami-Dade County
Place_Keyword: Monroe County
Place:
Place_Keyword_Thesaurus: USGS Geographic Names Information System
Place_Keyword: Taylor Slough
Place_Keyword: Big Cypress National Preserve
Place_Keyword: Everglades National Park
Place_Keyword: Florida Bay
Place_Keyword: Lostmans Slough
Place_Keyword: Shark Slough
Place:
Place_Keyword_Thesaurus: none
Place_Keyword: Central Everglades
Place_Keyword: SW Big Cypress
Place_Keyword: C-111 Canal
Access_Constraints: none
Use_Constraints:
These data are subject to change and are not citeable until reviewed and approved for official publication.
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Harry Jenter
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address: 430 National Center
City: Reston
State_or_Province: VA
Postal_Code: 20192
Country: USA
Contact_Voice_Telephone: 703 648-5916
Contact_Facsimile_Telephone: 703 648-5484
Contact_Electronic_Mail_Address: hjenter@usgs.gov
Browse_Graphic:
Browse_Graphic_File_Name: <http://water.usgs.gov/pubs/FS/fs-031-01/>
Browse_Graphic_File_Description: Satellite image showing TIME model boundary
Browse_Graphic_File_Type: JPEG
Browse_Graphic:
Browse_Graphic_File_Name: <http://time.er.usgs.gov/TIME/>
Browse_Graphic_File_Description:
maps of the station locations in the wetland regions and Florida Bay
Browse_Graphic_File_Type: JPEG
Data_Set_Credit:
Other scientists involved in the TIME modeling effort include: Ray Schaffranek, Greg Desmond, David Fitterman, Edward German, Jud Harvey, Clinton Hittle, John W. Jones, Chris Langevin, Victor Levesque, Carole McIvor, Eduardo Patino, James Saiers, Thomas J. Smith III, and Eric Swain.

Project personnel include: Ami Riscassi, Gordon Anderson, Vince Caruso, Ed Cyran, Maria Deszcz-Pan, Pat Gammon, David Garces, Bob Glover, Chuck Henkle, Sandra Kinnaman, Jim Krest, Al Lombana, Nancy Rybicki, Dan Sechrist, Gordon Shupe, Eddie Simonds, Lars Soderqvist, Marc Stewart, Jean-Claude Thomas, Jessica Thomas, Craig Thompson, Christa Walker, Kevin Whelan, Melinda Wolfert, and Mark Zucker.

Cross_Reference:
Citation_Information:
Originator: Jenter, H. L.
Publication_Date: 1999
Title:
Laboratory experiments for evaluating the effects of wind forcing on shallow waters with emergent vegetation
Series_Information:
Series_Name: Woods Hole Oceanographic Institution Technical Report
Issue_Identification: 99-04
Publication_Information:
Publication_Place: Woods Hole, MA
Publisher: Woods Hole Oceanographic Institution
Cross_Reference:
Citation_Information:
Originator:
Jenter, H. L.

Duff, M. P.

Publication_Date: 1999
Title:
Locally-forced wind effects on shallow waters with emergent vegetation
Series_Information:
Series_Name: Proceedings of the 3rd International Symposium on Ecohydraulics
Issue_Identification: none
Publication_Information:
Publication_Place: Salt Lake City, UT
Publisher: International Association for Hydraulic Research
Online_Linkage: <http://time.er.usgs.gov/whnew/v2n1/wind/windforce.pdf>
Cross_Reference:
Citation_Information:
Originator:
Stewart, M. A.

Bhatt, T. N. Fennema, R. J. Fitterman, D. V.

Publication_Date: 2002
Title:
The Road to Flamingo: an Evaluation of Flow Pattern Alterations and Salinity Intrusion in the Lower Glades, Everglades National Park
Series_Information:
Series_Name: USGS Open-File Reports
Issue_Identification: OFR 02-59
Publication_Information:
Publication_Place: Reston, VA
Publisher: U.S. Geological Survey
Online_Linkage: <http://sofia.usgs.gov/publications/ofr/02-59>
Cross_Reference:
Citation_Information:
Originator:
Ball, M. H.

Schaffranek, R. W.

Publication_Date: 2000
Title:
Flow-Velocity Data Collected in the Wetlands Adjacent to Canal C-111 in South Florida during 1997 and 1999
Series_Information:
Series_Name: USGS Open-File Report
Issue_Identification: OFR 00-56
Publication_Information:
Publication_Place: Reston, VA
Publisher: U.S. Geological Survey
Online_Linkage: <http://time.er.usgs.gov/bib/ofr/OFR_00-56.pdf>
Cross_Reference:
Citation_Information:
Originator: Schaffranek, R, W.
Publication_Date: 1999
Title:
Hydrologic Studies in Support of South Florida Ecosystem Restoration
Series_Information:
Series_Name:
Proceedings ASCE 2000 Joint Conference on Water Resources Engineering and Water Resources Planning and Management
Issue_Identification: none
Publication_Information:
Publication_Place: Reston, VA
Publisher: American Society of Civil Engineers
Online_Linkage: <http://sofia.usgs.gov/publications/papers/hydrostudies/>
Cross_Reference:
Citation_Information:
Originator:
Schaffranek, R. W.

Ruhl, H. A. Hansler, M. E.

Publication_Date: 1999
Title:
An Overview of the Southern Inland and Coastal System Project of the U.S. Geological Survey South Florida Ecosystem Program
Series_Information:
Series_Name:
Proceedings of the Third International Symposium on Ecohydraulics
Issue_Identification: none
Publication_Information:
Publication_Place: Salt Lake City, UT
Publisher: International Association for Hydraulic Research
Online_Linkage: <http://sofia.usgs.gov/publications/papers/overview_sics/>
Cross_Reference:
Citation_Information:
Originator: Swain. E. D
Publication_Date: 1999
Title:
Numerical Representation of Dynamic Flow and Transport at the Everglades/Florida Bay Interface
Series_Information:
Series_Name:
Proceedings of the Third International Symposium on Ecohydraulics
Issue_Identification: none
Publication_Information:
Publication_Place: Salt Lake City, UT
Publisher: International Association for Hydraulic Research
Online_Linkage: <http://time.er.usgs.gov/whnew/v2n1/numeric/numeric.pdf>
Cross_Reference:
Citation_Information:
Originator: Langevin, C. D.
Publication_Date: 2000
Title:
Simulation of Ground-Water Discharge to Biscayne Bay, Southeastern Florida
Series_Information:
Series_Name: Water Resources Investigations Reports
Issue_Identification: WRIR 00-4251
Publication_Information:
Publication_Place: Tallahassee, FL
Publisher: U.S. Geological Survey
Online_Linkage: <http://fl.water.usgs.gov/Abstracts/wri00_4251_langevin.html>
Cross_Reference:
Citation_Information:
Originator:
Riscassi, Ami L. <Schaffranek, Raymond
Publication_Date: 2002
Title:
Flow velocity, water temperature, and conductivity in Shark River Slough, Everglades National Park, Florida: July 1999-August 2001
Series_Information:
Series_Name: USGS Open-File Reports
Issue_Identification: OFR 02-159
Online_Linkage: <http://tine.er.usgs.gov/bib/abstracts/ofr02159.pdf>

Data_Quality_Information:
Logical_Consistency_Report: not applicable
Completeness_Report: not available
Lineage:
Process_Step:
Process_Description:
This project is focused on the translation of findings from hydrologic process studies and results of monitoring efforts from the Southern Inland and Coastal Systems (SICS) project toward the development of a model encompassing the entire saltwater-freshwater interface zone along the southwest Gulf coast and Florida Bay boundaries of Everglades National Park. The two-dimensional Surface Water Integrated Flow and Transport (SWIFT2D) model is being explicitly coupled to the Modular Groundwater Flow (MODFLOW) model with SEAWAT interface for surface/ground-water solute transport simulation. Extension of the SICS model domain westward and direct coupling of the surface-water and ground-water models is intended to resolve boundary limitation problems and to remove operational constraints of the current SICS model implementation. A website (<http://time.er.usgs.gov>) with a database repository for compilation of input data and sharing of model results has been constructed. Flow data for approximately 70 openings under Tamiami Trail (approximately 60 miles) have been compiled for water years 1987-1999. A numerical algorithm has been designed and developed to link the SWIFT2D model with the SEAWAT transport variant of MODFLOW and a MODFLOW grid and model component is under development for coupling to the SICS grid and mode. A flow monitoring station has been established near the wetland/tidal interface of Shark River to determine the feasibility of long term acoustic Doppler flow measurements in heavily vegetated areas. Initial ground-truthing of vegetation classifications determined from remote sensing imagery has begun. A preliminary and partial land-surface elevation grid of the TIME model domain has been generated from helicopter Aerial Height Finder (AHF) survey data.
Process_Date: 2001
Process_Step:
Process_Description:
The two-dimensional Surface Water Integrated Flow and Transport (SWIFT2D) model is being coupled to SEAWAT, a variable-density ground water flow model based on the Modular Groundwater Flow (MODFLOW) model, for concurrent simulation of surface and sub-surface flow and salt transport. A multi-layered SEAWAT ground-water model of the Southern Inland and Coastal System (SICS) has been developed for integration with the SICS surface-water model. A numerical algorithm has been developed to synchronize SWIFT2D tidal-compatible time steps with SEAWAT stress periods. The algorithm has undergone successful testing in the coupled SICS model. A report documenting regression techniques developed to correlate gaged and un-gaged culverts for model use has been prepared. A semi-automated procedure has been developed to spatially and temporally interpolate and formulate culvert and structure flows along Tamiami Trail from SFWMD and TIME databases to drive numerical model simulations. Flow monitoring in the wetlands to evaluate forcing effects has continued and a paper documenting thermal convection-driven mixing processes has been submitted for scientific peer-reviewed publication. The SWIFT2D model formulation is currently being extended to incorporate wind-stress sheltering, vegetative-resistance correlation, and energy-dependent evapotranspiration. The partial land-surface elevation grid of the TIME model domain has been extended to include Lostsman’s Slough with the addition of topographic data available in April, 2002. The preliminary version of the TIME model grid has been extended to the Tamiami Trail and Florida Bay boundaries.
Process_Date: 2002
Process_Step:
Process_Description:
The SWIFT2D surface water model code will be modified to accept vegetation type and density data from John Jones' mapping project (Land Charateristics from Remote Sensing) as an input dataset. The ability to use this dataset to calculate vegetative resistance for the model will be added as well. This resistance will be calculated based on the Stem-Reynolds-Number analysis of Lee, Roig and Jenter and the statistical correlation of Roig, Rybicki and Jenter. Initially, Manning's n values will be calculated in order for the model to maintain its original resistance formulation in unvegetated grid cells. However, a set of simplified model runs with be conducted with a test grid in order to explore alternative resistance formulations such as Darcy-Weisbach or direct specification of the frictional force. A final decision on the formulation to be used in the TIME model will be made in FY2004.

The model will also be modified to accept hourly time-dependent wind data and to calculate time- and space-dependent wind stress. These data will be interpolated from data archived in the TIME Data System. The model has been modified already to use a wind sheltering coefficient to calculate wind stress based on wind speed, the equivalent wind stress over unvegetated waters and a constant sheltering coefficient from the literature. This formulation will be refined to allow for spatial variation in the sheltering coefficient based on assignment of grid cells using John Jones' vegetation mapping data as input. Assignment will be based on findings from Jenter and Duff (1999) and from information derived from analysis of simultaneously deployed meteorological towers and profiling current meters at two locations within the Everglades: one in Water Conservation Area 3A and one in southern Shark Slough. These sites will be maintained and the data analyzed in order to apply the analysis to the wind sheltering specification in the model. These sites were installed in FY2002 and are expected to yield extremely useful information for the TIME modeling effort.

Process_Date: Not complete
Process_Step:
Process_Description:
The necessary data sets will be produced for the calibration period of the TIME surface-water model. Data from June, 1999 through August, 1999 will be extracted from the TIME Data System (TDS), carefully scrutinized, gaps will be filled through interpolation if necessary, and the data will be formatted for input into the model. All data will be interpolated temporally to match the model time step. Some of the datasets will require spatial interpolation as well. Specifically, maps of hourly wind speed, wind direction and rainfall will be produced from data in the TIME Data System for the calibration period. Project personnel will establish algorithms for this interpolation and will implement those algorithms as computer programs for the automatic creation of model input data. An effort will be made to automate much of the process of extracting data from the TDS, quality assuring, interpolating and reformatting it for use in the model in order to make both the TDS and the model easier to use for future applications. The TDS will be documented thoroughly in a USGS Open-file report in FY2003.

A secondary goal in FY2003 will be to assure that the entire TDS database from 1995 to present is quality assured and as complete as possible. Each of the over 200 datasets in the TDS will be reviewed. USGS personnel work closely with Everglades National Park personnel to ensure that the NPS data sets in the TDS are as up-to-date as possible. The web interface for the TDS will be modified to allow a simple and concise report of data completeness to be produced for arbitrarily specified time periods. The data-extraction scripts of the TDS will be modified to offer interpolation of missing data so the user can receive a gap-free dataset which can be more easily used as model input or for other purposes.

Process_Date: Not complete
Process_Step:
Process_Description:
The two-dimensional Surface Water Integrated Flow and Transport (SWIFT2D) model has been coupled to SEAWAT, a variable-density groundwater flow model based on the Modular Groundwater Flow (MODFLOW) model, for concurrent simulation of surface and sub-surface flow and salt transport. Flow monitoring in the wetlands to evaluate forcing effects and provide data for model calibration has continued. The SWIFT2D model formulation is currently being extended to incorporate spatial precipitation inputs, wind-stress sheltering, vegetative-resistance terms, and depth-dependent evapotranspiration. A land-surface elevation grid for the entire TIME model domain has been developed and a three-month simulation of the surface-water TIME model has been developed and tested.
Process_Date: 2003
Process_Step:
Process_Description:
Work planned for FY 2004 includes:

Incorporation of vegetative resistance and meteorological effects in to the TIME surface-water model

1. Modification of the SWIFT2D computer code will be made to best simulate vegetative resistance to flow. This will be part of finalization of code modifications to the SWIFT2D configuration applicable to the TIME modeling domain. Vegetative resistance code changes will be based on the published work of J. Lee et al. and Lee, Lai and Jenter. Statistical correlations between depth-averaged velocity data and depth-averaged vegetation data appear to be a potential link between the vegetative resistance work to date and the vegetative mapping work of John Jones. As such, this linkage will be incorporated into SWIFT2D to the extent possible.

Additionally, final code changes for meteorological forcing inputs will be completed. These will include code modifications for the acceptance of variable wind and NEXRAD rainfall fields. In order to prepare the TIME surface-water model for potential use in future scenario testing, the TIME Data System will be modified to automatically extract and format user-selected data for model input. SWIFT2D’s input processor will be modified to accept these automatically formatted data. Refinement of wind forcing and precipitation forcing algorithms in the model will be completed. These algorithms will be based partially on correlations derived from simultaneous wind and velocity measurements collected during this and previous rainy seasons.

2. Assembly , storage, and distribution of time-variable datasets for surface water modeling

The TIME Data System (TDS) will be finalized. All data sets for the time period January 1, 1995 through June 1, 2003 will be archived quality assured. All tools for extracting, viewing, analyzing, archiving and reformatting data for the TDS will be finalized. Final publication of a User’s Manual for the TDS will occur in FY2004. The TDS will be packaged in such a way that it can be directly transferred with the finalized version of SWIFT2D for future scenario testing.

The TIME project website, <http://time.er.usgs.gov> will be maintained through FY2004 as a gateway for TIME project and other South Florida researchers to download data from the TDS and TIME project reports.

Process_Date: Not complete
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Harry Jenter
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address: 430 National Center
City: Reston
State_or_Province: VA
Postal_Code: 20192
Country: USA
Contact_Voice_Telephone: 703 648-5916
Contact_Facsimile_Telephone: 703 648-5484
Contact_Electronic_Mail_Address: hjenter@usgs.gov

Distribution_Information:
Distributor:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Harry Jenter
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address: 430 National Center
City: Reston
State_or_Province: VA
Postal_Code: 20192
Country: USA
Contact_Voice_Telephone: 703 648-5916
Contact_Facsimile_Telephone: 703 648-5484
Contact_Electronic_Mail_Address: hjenter@usgs.gov
Resource_Description: TIME Data Sets
Distribution_Liability: This data is provisional and subject to change.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: ASCII
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: <http://time.er.usgs.gov/TIME/>
Access_Instructions:
Data may be selected and downloaded as zipped files from the TIME site at <http://time.er.usgs.gov/>
Digital_Form:
Digital_Transfer_Information:
Format_Name: netCDF
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: <http://time.er.usgs.gov/TIME/>
Access_Instructions:
Data may be selected and downloaded as zipped files from the TIME site at <http://time.er.usgs.gov/>
Fees: none

Metadata_Reference_Information:
Metadata_Date: 20040622
Metadata_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Jo Anne Stapleton
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing address
Address: 521 National Center
City: Reston
State_or_Province: VA
Postal_Code: 20192
Country: USA
Contact_Voice_Telephone: 703 648-4592
Contact_Facsimile_Telephone: 703 648-4614
Contact_Electronic_Mail_Address: jastapleton@usgs.gov
Metadata_Standard_Name: Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001-1998

This page is <http://sofia.usgs.gov/metadata/sflwww/TIME_04.html>

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