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NCBI Web Resources:
BLAST.
Compare your sequence to different
rat specific sequences.
Clone Registry. Find information about specific
BAC clones, including sequencing status, end sequence information,
and Fingerprint information.
dbSNP. Database of SNPs and other genetic variation.
e-PCR. Check your sequence
for STSs and view in genomic context.
Full Length cDNAs Sequences and clone reagents produced by full-length cDNA projects.
GEO. Gene Expression Omnibus, a public repository for expression data.
HomoloGene. Putative homologies among human, mouse, rat, and zebrafish.
LocusLink. Focal point for genes and associated information.
Map Viewer. Interactive viewer for genome maps,sequence, and genes.
RefSeq. Reference sequences of genomic contigs, mRNAs, and proteins.
SAGEmap. Gene expression results from SAGE tags mapped to sequences.
Trace Archive. Collection of raw sequence traces from various sequencing projects.
UniGene. Organization of transcribed sequences into gene-based clusters.
UniSTS. A non- redundant collection of STSs with links to maps and sequence.
FTP sites.
dbSNP
LocusLink
Genomes
RefSeq
UniGene
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Genomic resources
for the rat are increasing at an astounding pace. The rat has been
important for physiology resources.
This page is a gateway to rat resources insice and outside NCBI.
Rats are a useful model for human physiology.
photo courtesy of Anne Kwitek |
Just In...
- Rat genome is published.
- Comparative maps between rat, human and mouse available in Map Viewer.
** see rat chr4 along with human segments as an example **
- RH map.3.4 map was added to the Map Viewer as "MCW RH" map.
- NCBI build 2 released!
It includes the RGSC v3.1 assembly as a reference assembly. See it in Map Viewer. For more information, see release notes.
** see chr4 of RGSC v3.1 assembly as an example**
- Curated finished contigs released! Contigs based only on finished sequences are released as NCBI NT assemblyn a part of NCBI Build 2. See it in Map Viewer.
** see chr4 of NCBI NT assembly as an example**
Other Genomes:
Human Genome
Guide
Mouse Genome
Guide
Zebrafish
Genome Guide |
Genomic Biology
