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This is the beginning of a simple schematic depicting the longest mRNA-encoding exon/intron structure of the gene regionnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding regionexonnon-coding region
Click to Display mRNA-Genomic Alignments (spanning 416678 bps)
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   Homo sapiens Official Gene Symbol and Name (HGNC)
  PTPRD: protein tyrosine phosphatase, receptor type, D
 LocusID: 5789
Overview ?
RefSeq Summary: The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an extracellular region, a single transmembrane segment and two tandem intracytoplasmic catalytic domains, thus represents a receptor-type PTP. The extracellular region of this protein is composed of three Ig-like and eight fibronectin type III-like domains. Studies of the similar genes in chick and fly suggest the role of this PTP is in promoting neurite growth, and regulating neurons axon guidance. Multiple tissue specific alternatively spliced transcript variants of this gene have been reported.
Locus Type: gene with protein product, function known or inferred
Product: protein tyrosine phosphatase, receptor type, D isoform 1 precursor
protein tyrosine phosphatase, receptor type, D isoform 2 precursor
protein tyrosine phosphatase, receptor type, D isoform 3 precursor
protein tyrosine phosphatase, receptor type, D isoform 4 precursor
Alternate Symbols: HPTP, PTPD, HPTPD, HPTP-DELTA, R-PTP-DELTA
Alias: protein tyrosine phosphatase delta
protein tyrosine phosphatase, receptor type, delta polypeptide
FunctionSubmit GeneRIF(All Pubs)?

Please note: As a consequence of our transition to Entrez Gene, GeneRIFs will only be displayed in the Entrez Gene record for this locus. EntrezGene

 EC Number:  3.1.3.48                                                       
      Gene OntologyTM:  
     Term Evidence Source Pub
     
  • hydrolase activity
  • IEA GOA  
     
  • integral to plasma membrane
  • TAS GOA pm
     
  • phosphate metabolism
  • NAS GOA pm
     
  • protein amino acid dephosphorylation
  • IEA GOA pm
     
  • protein amino acid dephosphorylation
  • TAS GOA pm
     
  • protein tyrosine phosphatase activity
  • IEA GOA  
     
  • receptor activity
  • IEA GOA  
     
  • transmembrane receptor protein tyrosine phosphatase activity
  • TAS GOA pm
     
  • transmembrane receptor protein tyrosine phosphatase signaling pathway
  • TAS GOA pm

    Relationships ?
      Mouse, Rat Homology Map Viewer  

    Map Information ?
      Chromosome:9   mv
      Cytogenetic:9p23-p24.3  RefSeq 
      Markers: Chr. -SHGC-11668  
       Chr. -RH47322  
       Chr. -WI-15507  
       Chr. -WIAF-1582  
       Chr. -SGC35386  
       Chr. -AFM275yb9  
       Chr. -A003M12  
       Chr. -A004N43  
       Chr. -D9S2000 D9S2000
       Chr. -G31002  
       Chr. -WI-14734  
       Chr. -RH92488  
       Chr. -SHGC-62953  
       Chr. -G54705  
       Chr. -RH120363  
       Chr. -RH123842  
       Chr. -G59849  
       Chr. -G60140  
       Chr. -RH118651  
       Chr. -RH118973  
       Chr. -GDB:582179  
       Chr. -GDB:582183  
       Chr. -GDB:582186  
       Chr. -SHGC-132060  
       Chr. -SHGC-148223  

    NCBI Reference Sequences (RefSeq)?

    Please note: Conserved protein domain information will only be displayed in Entrez Gene. You may find the information for this locus here: EntrezGene

    Category: REVIEWED
    1.mRNA: NM_002839    
     Protein: NP_002830  protein tyrosine phosphatase, receptor type, D isoform 1 precursor BL
     Transcript Variant: This variant (1) encodes the longest isoform (1).
     GenBank Source: L38929    
    2.mRNA: NM_130391    
     Protein: NP_569075  protein tyrosine phosphatase, receptor type, D isoform 2 precursor BL
     Transcript Variant: This variant (2) lacks two separate internal segments within the coding region. It thus encodes a protein that lacks a 9 aa, and a 4 aa internal fragments, as compared to isoform 1.
     GenBank Source: L38929    
    3.mRNA: NM_130392    
     Protein: NP_569076  protein tyrosine phosphatase, receptor type, D isoform 3 precursor BL
     Transcript Variant: This variant (3) lacks an internal segment within the coding region. It thus encodes a protein that lack a 9 aa internal fragment, as compared to isoform 1.
     GenBank Source: L38929    
    4.mRNA: NM_130393    
     Protein: NP_569077  protein tyrosine phosphatase, receptor type, D isoform 4 precursor BL
     Transcript Variant: This variant (4) lacks an internal segment within the coding region. It thus encodes a protein that lacks a 411 aa internal fragment, and has one amino acid change, as compared to isoform 1.
     GenBank Source: L38929    

    Category: NCBI Genome Annotation
    1.Genomic Contig: NT_008413   gb sv mv ev mm
     Haplotype reference    
      Annotation for this locus:
    1.Evidence: supported by alignment with mRNA   
     mRNA: NM_002839    
     Protein: NP_002830   BL
    2.Evidence: supported by alignment with mRNA   
     mRNA: NM_130391    
     Protein: NP_569075   BL
    3.Evidence: supported by alignment with mRNA   
     mRNA: NM_130392    
     Protein: NP_569076   BL
    4.Evidence: supported by alignment with mRNA   
     mRNA: NM_130393    
     Protein: NP_569077   BL

    Category: NCBI Genome Annotation
    2.Genomic Contig: NT_086748   gb sv mv ev mm
     Haplotype Celera    
      Annotation for this locus:
    1.Evidence: supported by alignment with mRNA   
     mRNA: NM_002839    
     Protein: NP_002830   BL
    2.Evidence: supported by alignment with mRNA   
     mRNA: NM_130391    
     Protein: NP_569075   BL
    3.Evidence: supported by alignment with mRNA   
     mRNA: NM_130393    
     Protein: NP_569077   BL

    Related Sequences ?
    Nucleotide Type Protein   
    BC028038 m      
    L38929 m AAC41749   BL
    X54133 m CAA38068   BL
    None p P23468   BL

    Additional Links ?
     
     
     

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