Sample session:
helix% more jc5122.pir2 P1;JC5122 - superoxide dismutase (EC 1.15.1.1) (Mn) precursor - Caenorhabditis elegans C;Species: Caenorhabditis elegans C;Date: 02-Feb-1997 #sequence_revision 27-Feb-1997 #text_change 13-Mar-1997 C;Accession: JC5122; JS0750 [...etc etc....] jc5122.pir2 Length: 221 August 14, 1997 10:53 Type: P Check: 1490 .. 1 MLQNTVRCVS KLVQPITGVA AVRSKHSLPD LPYDYADLEP VISHEIMQLH 51 HQKHHATYVN NLNQIEEKLH EAVSKGNVKE AIALQPALKF NGGGHINHSI 101 FWTNLAKDGG EPSAELLTAI KSDFGSLDNL QKQLSASTVA VQGSGWGWLG 151 YCPKGKILKV ATCANQDPLE ATTGLVPLFG IDVWEHAYYL QYKNVRPDYV 201 NAIWKIANWK NVSERFAKAQ Q helix% reformat -oneintothree Reformat rewrites sequence file(s), scoring matrix file(s), or enzyme data file(s) so that they can be read by GCG programs. REFORMAT what sequence file(s) ? jc5122.pir2 jc5122.pir2 length: 663 aa helix% more jc5122.pir2 P1;JC5122 - superoxide dismutase (EC 1.15.1.1) (Mn) precursor - Caenorhabditis elegans C;Species: Caenorhabditis elegans C;Date: 02-Feb-1997 #sequence_revision 27-Feb-1997 #text_change 13-Mar-1997 C;Accession: JC5122; JS0750 [... etc etc ...] F;50,98,182,186/Binding site: manganese (His, His, Asp, His) #status predicted jc5122.pir2 Length: 663 August 14, 1997 10:53 Type: P Check: 9126 .. 1 Met Leu Gln Asn Thr Val Arg Cys Val Ser Lys Leu Val Gln Pro 46 Ile Thr Gly Val Ala Ala Val Arg Ser Lys His Ser Leu Pro Asp 91 Leu Pro Tyr Asp Tyr Ala Asp Leu Glu Pro Val Ile Ser His Glu 136 Ile Met Gln Leu His His Gln Lys His His Ala Thr Tyr Val Asn 181 Asn Leu Asn Gln Ile Glu Glu Lys Leu His Glu Ala Val Ser Lys 226 Gly Asn Val Lys Glu Ala Ile Ala Leu Gln Pro Ala Leu Lys Phe 271 Asn Gly Gly Gly His Ile Asn His Ser Ile Phe Trp Thr Asn Leu 316 Ala Lys Asp Gly Gly Glu Pro Ser Ala Glu Leu Leu Thr Ala Ile 361 Lys Ser Asp Phe Gly Ser Leu Asp Asn Leu Gln Lys Gln Leu Ser 406 Ala Ser Thr Val Ala Val Gln Gly Ser Gly Trp Gly Trp Leu Gly 451 Tyr Cys Pro Lys Gly Lys Ile Leu Lys Val Ala Thr Cys Ala Asn 496 Gln Asp Pro Leu Glu Ala Thr Thr Gly Leu Val Pro Leu Phe Gly 541 Ile Asp Val Trp Glu His Ala Tyr Tyr Leu Gln Tyr Lys Asn Val 586 Arg Pro Asp Tyr Val Asn Ala Ile Trp Lys Ile Ala Asn Trp Lys 631 Asn Val Ser Glu Arg Phe Ala Lys Ala Gln Gln |