For a batch run, however, the program is running on another computer, and it is not as easy to kill the program. During normal working hours, you can call up the helix staff (4-DCRT) and ask them to kill it for you. If you want to kill it yourself, you need to rlogin to churn, find the process, and kill it. Sample session:
helix% mfold -batch >> Setting up remote run on churn.nih.gov... MFold predicts optimal and suboptimal secondary structures for an RNA molecule using the most recent energy minimization method of Zuker. (Linear) MFOLD what sequence ? mzeorp1a.gb_pl Begin (* 1 *) ? End (* 1382 *) ? What should I call the energy matrix output file (* mzeorp1a.mfold *) ? ** mfold will run as a batch or at job. ** mfold was submitted using the command: " atnow " warning: commands will be executed using /bin/sh job 908896860.a at Tue Oct 20 11:21:00 1998 |
>> Setting up remote run on churn.nih.gov...which is a major clue that the program is running remotely on churn. I now realize I put in the wrong sequence and want to kill this run before it goes for days.
helix% rlogin churn IRIX Release 6.2 IP25 churn Copyright 1987-1996 Silicon Graphics, Inc. All Rights Reserved. Last login: Tue Oct 20 09:52:40 EDT 1998 by susanc@chisos.cit.nih.gov Share II resource management; Copyright (C) 1989-1995 Softway Pty Ltd Share login on /dev/ttyq19. Tue Oct 20 11:21:48 EDT 1998 churn% ps -fu susanc UID PID PPID C STIME TTY TIME CMD susanc 29736 29735 19 11:21:45 pts/19 0:01 -tcsh susanc 29634 840 0 11:21:05 ? 0:00 sh susanc 29635 29634 0 11:21:06 ? 0:00 /bin/csh -f ./mfold_29611_1 susanc 29761 29736 8 11:22:19 pts/19 0:00 ps -fu susanc susanc 28429 28428 0 09:52:40 pts/17 0:01 -tcsh susanc 29636 29635 80 11:21:06 ? 1:05 /gcg/gcgbin/execute/mfold -Init=mfold_29611_1.init susanc 29637 29635 0 11:21:06 ? 0:00 Mail -s mfold susanc susanc 19125 19124 0 14:13:27 pts/13 0:01 -tcsh churn% kill 29636 churn% ps -fu susanc susanc 18938 18937 0 14:05:30 pts/12 0:04 -tcsh susanc 29736 29735 0 11:21:45 pts/19 0:01 -tcsh susanc 29776 29736 7 11:23:19 pts/19 0:00 ps -fu susanc churn% exit helix% |