|
|
|
ABCC Applications Web Page
Welcome to the ABCC Accessible Application Web Page.
From this page, you can get information about our scientific applications and databases. To get more information about any topic, or to run an application, click on any of the mouseover popup menu items on the left-hand side. Program with a tag "Run" is runnable. This site continues to grow, so come back often to check out the many accessible applications available here at the Advanced Biomedical Computing Center (ABCC).
If you have any comments or suggestions, please contact us Help link
Alignment Server
Clustalw
Clustal W is a general purpose multiple sequence alignment program
for DNA or proteins.It produces biologically meaningful multiple
sequence alignments of divergent sequences. It calculates the best
match for the selected sequences, and lines them up so that the
identities, similarities and differences can be seen. Evolutionary
relationships can de seen via viewing Cladograms or Phylograms.
Website: Click Here
Clustal_W
Clustal W is a multiple sequence alignment tool. It uses sequence
weighting, positions-specific gap penalties and weight matrix choice
to improve the sensitivity of progressive multiple sequence
alignment.
Website: Click Here
ClustalX
Clustal X provides a window-based user interface to the ClustalW
multiple alignment program.
Website: Click Here
ESPript
ESPript generates a PostScript file of aligned sequences with
graphical enhancements. Its main input is an ascii file of
pre-aligned sequences. Optional files allow further rendering. The
program calculates a similarity score for each residue of the
aligned sequences.
The output shows:
Secondary Structures
Aligned sequences
Similarities
Consensus
Accessibility
Hydropathy
User-supplied markers
Intermolecular contacts
In addition, similarity score can be written in the bfactor column
of a pdb file, to enable direct display of highly conserved areas.
Website: Click Here
Jalview
Jalview is a multiple alignment editor written entirely in java.
Website: Click Here
|
|
