Biowulf Benchmarks
Blast
Benchmarks (10/30/02)
fastDNAml
Benchmarks (6/2002)
Amber
benchmarks (2002)
NAMD
benchmarks (2002)
GROMACS benchmarks (2004)
CNS benchmarks (2004)
CHARMM (c28b3) Benchmarks
(7/22/02)
Model: Myoglobin with CO in a cubic box of 4985 water molecules
Test : dynamics using pme (Particle Mesh Ewald) method, nstep = 1000
CHARMM (c28b3) Benchmarks
(12/5/01)
Model: Myoglobin with CO in a cubic box of 4985 water molecules
Test : dynamics using pme (Particle Mesh Ewald) method, nstep = 1000
Test: QM using GAMESS, nstep = 1
MPICH/GM Benchmarks
(3/27/01)
These benchmarks are
described in /usr/local/src/mpich-1.2..5/examples/perftest
|
|
Average latency
(uS) |
Average transfer
rate
(Mbytes/s) |
p2p-short |
blocking point-to-point
message sizes 0 - 1k bytes |
9.77 |
37.05 |
p2p-long |
blocking point-to-point
message sizes 16k - 64k bytes |
118.33 |
193.95 |
nbpt2pt-long |
non-blocking
point-to-point
message sizes 16k - 64k bytes |
119.06 |
193.44 |
bisect8-short |
bisectional bandwidth
message sizes 0 - 1k bytes
8 procs on 8 nodes |
9.77 |
148.47 |
bisect8-long |
bisectional bandwidth
message sizes 16k - 64k bytes
8 procs on 8 nodes |
118.32 |
193.96 |
bw |
Blocking bandwidth
0 - 4MBytes |
9.96 |
218.12 |
MPICH/GM Benchmarks (3/27/00)
These benchmarks are
described in /usr/local/src/mpich-1.1.2..13/examples/perftest.
|
|
latency
(uS) |
transfer rate
(Mbytes/s) |
variance
in fit |
pt2ptshort |
blocking point-to-point
message sizes 0 - 1k bytes |
24.55 |
25.29 |
0.000034 |
pt2ptlong |
blocking point-to-point
message sizes 16k - 64k bytes |
119.77 |
50.16 |
0.001753 |
nbpt2ptlong |
non-blocking
point-to-point
message sizes 16k - 64k bytes |
121.85 |
50.03 |
0.001655 |
bisectshort8 |
bisectional bandwidth
message sizes 0 - 1k bytes
8 procs on 8 nodes |
24.53 |
25.30 |
0.000034 |
bisectlong8 |
bisectional bandwidth
message sizes 16k - 32k bytes
8 procs on 8 nodes |
125.30 |
50.63 |
0.001646 |
MPICH/GM Benchmarks (10/20/99)
These benchmarks are
described in /usr/local/src/mpich-1.1.2..7/examples/perftest.
|
|
latency
(uS) |
transfer rate
(Mbytes/s) |
variance
in fit |
pt2ptshort |
blocking point-to-point
message sizes 0 - 1k bytes |
32.05 |
24.47 |
0.000043 |
pt2ptlong |
blocking point-to-point
message sizes 16k - 64k bytes |
143.91 |
50.73 |
0.001593 |
nbpt2ptlong |
non-blocking
point-to-point
message sizes 16k - 64k bytes |
147.85 |
51.02 |
0.001584 |
bisectshort16 |
bisectional bandwidth
message sizes 0 - 1k bytes
16 procs on 16 nodes |
32.06 |
24.37 |
0.000043 |
bisectlong16 |
bisectional bandwidth
message sizes 16k - 32k bytes
16 procs on 16 nodes |
132.76 |
49.83 |
0.001622 |
bisectshort32 |
bisectional bandwidth
message sizes 0 - 1k bytes
32 procs on 16 nodes |
32.06 |
24.37 |
0.000043 |
bisectlong32 |
bisectional bandwidth
message sizes 16k - 32k bytes
32 procs on 16 nodes |
142.69 |
50.73 |
0.001593 |
Performance testing
a la Myricom: runex generates basic latency and bandwidth performance data.
Benchmarks published by Myricom for 64-bit and 32-bit interfaces.
|