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Taxonomy browser (Danio rerio)

Danio rerio

Taxonomy ID: 7955
Genbank common name: zebrafish
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
synonym: Brachydanio rerio
common name: zebra fish
common name: zebra danio
Lineage( full )
cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Elopocephala; Clupeocephala; Otocephala; Ostariophysi; Otophysi; Cypriniphysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
   Entrez records   
Database name Direct links
Nucleotide 778,311
Protein 17,348
Structure 2
Genome 1
Popset 7
SNP 1,956
3D Domains 2
Domains 1
UniGene 23,471
UniSTS 27,013
PubMed Central 239
Gene 14,482
HomoloGene 8,276
Taxonomy 1

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Danio rerio
Genome view: 25 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
   Trace records (raw single-pass reads of DNA sequence)   
Center name Record counts per type
CLONEEND EST FINISHING SHOTGUN WGS ALL
ABC - Agencourt Bioscience Corporation 0 185,218 0 0 0 185,218
GIS - Genome Institute of Singapore 0 36,311 0 0 0 36,311
MPGEB - Max-Planck Institute for Developmental Biology 264,602 0 0 0 0 264,602
NISC - NIH Intramural Sequencing Center 0 0 0 180,864 0 180,864
SC - The Sanger Centre 164,302 0 0 0 16,744,812 16,909,114
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology 0 0 228 3,897 0 4,125
WUGSC - Washington University, Genome Sequencing Center 0 64,518 0 0 0 64,518
Total 428,904 286,047 228 184,761 16,744,812 17,644,752

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
FishBase taxonomy/phylogenetic FishBase
Brachydanio rerio taxonomy/phylogenetic Integrated Taxonomic Information System
Danio rerio taxonomy/phylogenetic
zebrafish genome resources organism-specific NCBI Genome Guide
NCBI Mitochondria DNA/protein sequence NCBI Mitochondrial Genomes
Zebrafish Information Network taxonomy/phylogenetic NCBI taxonomy bookmarks
zebrafish organism-specific Trans-NIH Model Organism Initiative
Brachydanio rerio taxonomy/phylogenetic TreeBase
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.
To see LinkOut links in this lineage click here

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov
Credits: Joe Bischoff, Mikhail Domrachev, Scott Federhen, Carol Hotton, Detlef Leipe, Vladimir Soussov, Richard Sternberg, Sean Turner.
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