Pathogen |
Strain |
Awardee/Grant Info |
Website/Reference |
COMPLETED GENOME PROJECTS |
Anopheles gambiae |
PEST |
Celera Genomics U01AI50687 |
Holt et al
Science 298 (5591): 129-49 (2002)
http://www.niaid.nih.gov/dmid/genomes/anopheles.htm
|
Aspergillus fumigatus |
Af293 |
Victoria University of Manchester
U01 AI48830 |
http://www.sanger.ac.uk/Projects/A_fumigatus
http://www.tigr.org/tdb/fungal
|
Bacillus anthracis |
|
The Institute for Genomic Research
NIAID Contract |
|
Bacillus anthracis |
Ames |
Office of Naval Research & TIGR
|
Read et al
Nature 423: 81-82 (2003)
Read et al
Science 296: (5575):2028 (2002)
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Bacillus anthracis |
Kruger B1 |
The Institute for Genomic Research (TIGR) NIAID Contract |
|
Bacillus anthracis |
Western North America |
The Institute for Genomic Research (TIGR) NIAID Contract |
|
Bacillus cereus |
G9241 |
The Institute for Genomic Research (TIGR)
NIAID Contract |
|
Bacillus cereus |
10987 |
The Institute for Genomic Research (TIGR) NIAID Contract |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Brucella suis |
1330 |
The Institute for Genomic Research (TIGR) U01 AI49036 |
Paulsen, I et al
PNAS 99 (20): 13148-13153 (2002)
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Burkholderia mallei |
ATCC23344 |
The Institute for Genomic Research (TIGR) U01AI49037 |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Chlamydia pneumoniae |
AR39 |
The Institute for Genomic Research (TIGR) R01AI43359 |
Read et al.
Nucleic Acids Research 28 (6):1397-1406 (2000)
http://www.tigr.org/tdb/mdb/mdbcomplete.html
|
Chlamydia trachomatis |
serovar D |
University of California, Berkeley R01AI39258 |
Stephens et al.
Science 282 (5389):754-59 (1998)
http://www.stdgen.lanl.gov/
|
Chlamydia trachomatis |
Mouse pneumonitis |
The Institute for Genomic Research (TIGR) R01AI43359 |
Read et al.
Nucleic Acids Research 28 (6):1397-1406 (2000)
http://www.tigr.org/tdb/mdb/mdbcomplete.html
|
Clostridium perfringens |
ATCC 13124 |
The Institute for Genomic Research (TIGR) U01AI49921 |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Coxiella burnetii |
Nine Mile phase I RSA 493 |
The Institute for Genomic Research (TIGR) U01AI49034 |
Seshadri et al
PNAS 100 (9): 5455 - 5460 (2003)
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Cryptococcus neoformans |
JEC21 serotypeD |
The Institute for Genomic Research (TIGR) U01AI48594 |
http://www.tigr.org/tdb/e2k1/cna1/
|
Cryptococcus neoformans |
B3501 serotypeD |
Stanford University U01 AI47087 |
http://www-sequence.stanford.edu/group/C.neoformans/index.html
|
Cryptosporidum parvum |
Human isolate |
Virginia Commonwealth University
U01 AI46418 |
http://www.parvum.mic.vcu.edu
|
Cryptosporidum parvum |
Iowa |
University of Minnesota U01 AI46397 |
http://www.cbc.umn.edu/ResearchProjects/AGAC/Cp/index.htm
|
Entamoeba histolytica |
HM1:IMSS |
The Institute for Genomic Research (TIGR)
R01AI46516 |
http://www.tigr.org/tdb/e2k1/eha1
|
Enterococcus faecalis |
V583 (vancomycin resistant) |
The Institute for Genomic Research (TIGR) U01AI40963 |
Paulsen et al
Science 299 (5615) 2071-2074 (2003)
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Escherichia coli |
K1 RS218 meningitis strain |
University of Wisconsin U01AI44387 |
http://www.genome.wisc.edu
|
Escherichia coli |
CFT073 uropathogenic strain |
University of Wisconsin U0144387 |
http://www.genome.wisc.edu
|
Escherichia coli |
0157:H7 |
University of Wisconsin U01AI41329 |
Perna et al
Nature 409 (6819): 529-533(2001)
http://www.genome.wisc.edu
|
Group B streptococcus |
A909 |
The Institute for Genomic Research (TIGR) U01AI50909 |
Tettelin
Proc. Natl. Acad. Sci. 99: 12391-12396 (2002)
|
Haemophilus ducreyi |
35000HP |
Ohio State University R01AI45091 |
http://www.microbial-pathogenesis.org
|
Klebsiella pneumoniae |
MGH 78578 |
Washington University , St Louis U01AI43283 |
|
Legionella pneumophila |
Philadelphia 1 |
Columbia University
U01AI44371 |
http://genome3.cpmc.columbia.edu/~legion/
|
Leishmania major |
Friedlin Chromosome 1 |
Seattle Biomedical Research Institute U01AI40599 |
Myler et al.
Proc. Natl. Acad. Sci. USA 96:2902-06 (1999)
http://www.genedb.org/genedb/leish/index.jsp
|
Leishmania major |
Friedlin |
Seattle Biomedical Research Institute U01AI40599 |
http://www.genedb.org/genedb/leish/index.jsp
|
Mycobacterium avium |
104 |
The Institute for Genomic Research (TIGR) R01AI41943 |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Mycobacterium tuberculosis |
CSU 93
(Virulent clinical isolate) |
The Institute for Genomic Research (TIGR) R01AI40125 |
Fleishcmann et al
J.Bacteriol. 184 (19): 5479 - 5490 (2002)
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Neisseria gonorrhoeae |
FA1090 |
University of Oklahoma R01AI38399 |
http://www.genome.ou.edu/gono.html
|
Nematode EST project |
|
Washington University, St. Louis U01 AI46593 |
http://www.nematode.net
|
Plasmodium falciparum |
3D7 |
TIGR & Naval Medical Research Institute U01 AI42243 |
Gardner et al
Nature 419 (6906) 498-511 (2002)
Gardner et al
Nature 419 (6906) 531-534 (2002)
Gardner et al
Science 282 (5391): 1126-1132 (1998)
http://PlasmoDB.org
|
Rickettsia rickettsii |
Sheila Smith |
Institute for Systems Biology U01AI50942 |
|
Rickettsia typhi |
Wilmington |
University of Texas, Galveston U01AI49040 |
http://www.hgsc.bcm.tmc.edu
|
Salmonella paratyphi A |
ATCC 9150 |
Washington University , St Louis U01AI43283 |
|
Salmonella typhi |
TY2 |
University of Wisconsin U01 AI44387 |
http://www.genome.wisc.edu
|
Salmonella typhimurium |
LT2 |
Washington University, St. Louis U01AI43283 |
McClelland et al.
Nature 413: 852-856 (2001)
http://genome.wustl.edu/projects/bacterial/styphimurium/
|
Shigella flexneri |
Serotype 2a |
University of Wisconsin U01AI44387 |
http://www.genome.wisc.edu
|
Staphylococcus aureus |
COL(methicillin resistant) |
The Institute for Genomic Research (TIGR) R01AI43567 |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Staphylococcus aureus |
8325(antibiotic sensitive) |
University of Oklahoma R01AI43568 |
http://www.genome.ou.edu/staph.html
|
Staphylococcus epidermidis |
RP62A |
The Institute for Genomic Research (TIGR) U01 AI45667 |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Streptococcus pneumoniae |
serotype 4 |
University of Alabama, Birmingham R01AI40645 |
Tettelin, H et al
Science 293 (5529): 498-506 (2001)
http://genome.microbio.uab.edu//strep/
|
Streptococcus pyogenes |
M1 GAS |
University of Oklahoma R01AI38406 |
Ferretti et al
Proc. Natl. Acad. Sci. USA 98 (8): 4658-63 (2001)
http://www.genome.ou.edu/strep.html
|
Toxoplasma gondii |
ME49 |
The Institute for Genomic Research (TIGR)
U01AI50930 |
http://toxodb.org
|
Treponema pallidum |
Nichols |
University of Texas Health Science Center & TIGR R01AI40390 |
Fraser et al.
Science 281 (5375):375-88 (1998)
http://www.tigr.org/tdb/mdb/mdbcomplete.html
http://www.stdgen.lanl.gov
|
Trypanosoma brucei |
TREU 927/4 |
The Institute for Genomic Research (TIGR)
R01AI43062 |
http://www.genedb.org/genedb/tryp/index.jsp
http://www.tigr.org/tdb/e2k1/tba1
|
Trypanosoma cruzi |
CL Brener |
University of Karolinska U01 AI 45061 |
|
Trypanosoma cruzi |
CL Brener |
Seattle Biomedical Research Institute U01 AI45039 |
|
Trypanosoma cruzi |
CL Brener |
The Institute for Genomic Research (TIGR) U01 AI45038 |
http://www.tigr.org/tdb/e2k1/tca1
|
Ureaplasma urealyticum |
serovar 3 |
University of Alabama, Birmingham R01AI28279 |
Glass et al
Nature 407 (6805): 757-762 (2000)
http://www.stdgen.lanl.gov
http://genome.microbio.uab.edu/uu/uugen.htm
|
Vibrio cholerae |
N16961 Serotype 01, biotype El Tor |
The Institute for Genomic Research (TIGR) R01AI40535 |
Heidelberg et al
Nature 406 (6795): 477-83 (2000)
http://www.tigr.org/tdb/mdb/mdbcomplete.html
|
Wolbachia spp. |
Drosophila and Brugia malayi |
Yale University U01 AI47409 |
|
Yersinia pestis |
KIM5 P12 |
University of Wisconsin U01 AI44387 |
Deng et al
J.Bacteriol. 184 (16): 4601-11 (2002)
http://www.genome.wisc.edu
|
ONGOING SEQUENCING PROJECTS |
Aedes aegypti |
Rexville |
University of Notre Dame U01 AI50936 |
|
Anopheles gambiae |
PEST |
University of Notre Dame U01AI48846 |
http://www.anobase.org/
|
Brugia malayi |
NIAID/TRS |
The Institute for Genomic Research (TIGR) U01AI50903 |
http://www.tigr.org/tdb/e2k1/bma1
|
Burkholderia thailandensis |
E264 |
The Institute for Genomic Research U01 AI49037 |
|
Clostridium perfringens |
SM101 |
The Institute for Genomic Research U01 AI49921 |
|
Coccidioides immitis |
C735 |
The Institute for Genomic Research (TIGR) U01AI50910 |
http://www.tigr.org/tdb/ufmg
|
Ehrlichia spp. |
|
Ohio State University R01AI47885 |
http://riki-lb1.vet.ohio-state.edu/ehrlichia
|
Giardia lamblia |
WB5 chromosomes |
Marine Biological Laboratory U01AI43273 |
http://hermes.mbl.edu/baypaul/Giardia-HTML/index2.html
|
Histoplasma capsulatum |
G217B |
Washington University, St Louis U01AI50934 |
http://genome.wustl.edu/projects/hcapsulatum
|
Mycobacterium smegmatis |
MC2155 |
The Institute for Genomic Research (TIGR) U01 AI46517 |
http://www.tigr.org/tdb/mdb/mdbinprogress.html
|
Plasmodium vivax |
Salvador I |
The Institute for Genomic Research (TIGR) U01 AI42243 |
|
Pneumocystis carinii |
Rat and human isolates |
University of Cincinnati R01AI44651 |
http://pneumocystis.uc.edu
|
Schistosoma mansoni |
Puerto Rican Strain |
The Institute for Genomic Research (TIGR) U01AI48828 |
http://www.tigr.org/tdb/e2k1/sma1
|
Streptococcus pneumonia |
serotype 6 |
University of Alabama, Birmingham R01AI40645 |
http://genome.microbio.uab.edu//strep/
|
Trichomonas vaginalis |
G3 |
The Institute for Genomic Research U01AI050913 |
|