s=2 limits finds to patterns found a minimum of 2 times
-MAXCuts=3 limits finds to patterns found a maximum of 3 times
-EXCLude=n1,n2 excludes patterns found between positions n1 and n2
-NOMONitor suppresses the screen trace showing each file
-NOSUMmary suppresses the screen summary at the end of the program
Add what to the command line ? -frequent
MOTIFs from what protein sequence(s) ? cram_craab.swissprot
What should I call the output file (* cram_craab.motifs *) ?
cram_craab.swissprot len: 46 ............................
Total finds: 2
Total length: 46
Total sequences: 1
CPU time (sec): 01.19
Output file: "/u5/susanc/cram_craab.motifs"
How do I edit more than 30 aligned sequences?
You're out of luck, GCG's multiple sequence editors cannot handle
more than 30 sequences at once.
Why can't I find a published sequence?
We maintain Genbank on helix, and only those parts of EMBL that
are not present in Genbank. There are several possible reasons
why you might not find a published sequence:
- Are you searching in the right database? If you are using
GCG's Lookup program, you can search 'Genbank' &/or 'GB_New'.
The 'Genbank' database contains the last release of Genbank.
The 'GB_New' database contains all updates since that release,
upto the previous night. If the data were published recently,
the sequence might be in GB_New rather than Genbank.
- Are you searching by accession number? If so, make sure
you are using the Genbank accession number rather than EMBL...