otal sequences: 1
CPU time (sec): 01.19
Output file: "/u5/susanc/cram_craab.motifs"
How do I edit more than 30 aligned sequences?
You're out of luck, GCG's multiple sequence editors cannot handle
more than 30 sequences at once.
Why can't I find a published sequence?
We maintain Genbank on helix, and only those parts of EMBL that
are not present in Genbank. There are several possible reasons
why you might not find a published sequence:
- Are you searching in the right database? If you are using
GCG's Lookup program, you can search 'Genbank' &/or 'GB_New'.
The 'Genbank' database contains the last release of Genbank.
The 'GB_New' database contains all updates since that release,
upto the previous night. If the data were published recently,
the sequence might be in GB_New rather than Genbank.
- Are you searching by accession number? If so, make sure
you are using the Genbank accession number rather than EMBL...
- In the Lookup program, try searching 'All text' for
words relevant to your sequence, in case the published
accession number has a typo.
- Authors sometimes request that their data be held in confidence
until after publication, even though they have already been
assigned an accession number. This may create a delay in the
release of the data.
How do I get my sequences into Pileup?
You need a file that contains the names of all the sequences
you want to put into
Pileup. If the sequence files are actually
in your own directory, and are all in GCG format, your input
file can look like this:
--------------------------- File pileup.inp -------------------
w68343.gb_new
x12871.gb_new
hcu31231.gb_vi
hsig487.gb_pr
---------------------------------------------------------------
When pileup asks for the sequences, type '@pileup.inp' in
response. Note the '@' symbol before the filename; this tells
GCG that the file contains a list of sequences. The filename
itself should not start