Pro Asp
91 Leu Pro Tyr Asp Tyr Ala Asp Leu Glu Pro Val Ile Ser His Glu
136 Ile Met Gln Leu His His Gln Lys His His Ala Thr Tyr Val Asn
181 Asn Leu Asn Gln Ile Glu Glu Lys Leu His Glu Ala Val Ser Lys
226 Gly Asn Val Lys Glu Ala Ile Ala Leu Gln Pro Ala Leu Lys Phe
271 Asn Gly Gly Gly His Ile Asn His Ser Ile Phe Trp Thr Asn Leu
316 Ala Lys Asp Gly Gly Glu Pro Ser Ala Glu Leu Leu Thr Ala Ile
361 Lys Ser Asp Phe Gly Ser Leu Asp Asn Leu Gln Lys Gln Leu Ser
406 Ala Ser Thr Val Ala Val Gln Gly Ser Gly Trp Gly Trp Leu Gly
451 Tyr Cys Pro Lys Gly Lys Ile Leu Lys Val Ala Thr Cys Ala Asn
496 Gln Asp Pro Leu Glu Ala Thr Thr Gly Leu Val Pro Leu Phe Gly
541 Ile Asp Val Trp Glu His Ala Tyr Tyr Leu Gln Tyr Lys Asn Val
586 Arg Pro Asp Tyr Val Asn Ala Ile Trp Lys Ile Ala Asn Trp Lys
631 Asn Val Ser Glu Arg Phe Ala Lys Ala Gln Gln
Blast gives me an error: Server did not say "ok"
When you run Blast on the helix systems, the search actually runs
to the computers at
NCBI. As of Jan 1998, the NCBI 'experimental'
servers (Cruncher and Muncher), which used to process blast jobs,
have been replaced. The new system now sends blast jobs to
the NCBI web server. If the server is overloaded or the network
is slow, you may see the following error message:
helix% blast x89712.genpept -default
Sending query...
Awaiting results...
** Server did not say "OK".
Your options are to try again later, use the Blast email server
(add '-mail' to the command line), or use
Blast via the web.
The old 'blast -batch' command doesn't work anymore; to run
blast in batch mode see
How do I run blast
searches in batch mode
Why have my alignments changed in Version 9?
The following information is taken from the
GCG Newsletter, July 1997.
Protein sequence alignment programs in the Wisconsin Package use scoring
matrices to make comparisons between pairs of amino acids. In Version 9