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Research Project:
Predictive Microbiology and Process Risk Models of Foodborne Pathogens
Location:
Microbial Food Safety Research
Title: Combase: a Common Database on Microbial Response to Food Environments
Authors
Submitted to: Journal Of Food Protection
Publication Acceptance Date: January 8, 2004
Publication Date: September 1, 2004
Citation: Baranyi, J., Tamplin, M.L. 2004. Combase: A Common Database On Microbial Response To Food Environments. Journal Of Food Protection. 67(9):1834-1840.
Interpretive Summary: The advancement of predictive microbiology relies on available data that describe the behavior of microorganisms in different environmental matrices. In order for such information to be useful to the predictive microbiology research community, data must be organized in a manner that permits efficient access and data retrieval. In this paper, a database protocol is described that encompasses observations of bacterial responses to food environments, resulting in a common database, ComBase, for predictive microbiology purposes. The data included in ComBase were obtained from cooperating research institutes and the scientific literature, and will be made publicly available via the Internet in early 2003.
Technical Abstract: Food microbiology research has resulted in large quantities of microbiological data that describe bacterial responses to various environments. Such data form the basis of predictive microbiology software packages such as the Pathogen Modeling Program (PMP) and the Food MicroModel. These software packages produce predictions of bacterial responses to food environments characterised by controlling factors such as temperature, pH, water activity, atmosphere composition and/or food additives. We describe a relational database, ComBase (i.e., Common Database), and demonstrate it using datasets produced by the combined efforts of the Institute of Food Research, Norwich, UK; the Food Standards Agency, UK; and the USDA ARS Eastern Regional Research Center, Wyndmoor, PA, USA. At the core of ComBase are the data forming the basis of the growth models in the PMP software package. These core data were extended with data submitted by collaborating institutes and with data recorded from the scientific literature. ComBase will be accessible to the public via the Internet in early 1993.
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