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NCBI Web Resources
The NCBI Handbook.     An online guide to NCBI resources.
BLAST Traces. Search Trace Archive with MegaBLAST.
BLAST Zebrafish. BLAST your sequences against Zebrafish mRNA, EST, and genome sequences.
Clone Registry. Find information about specific clones selected for genome sequencing.
dbSNP. Database of SNPs and other genetic variation.
Entrez Gene. Focal point for genes and associated information.
e-PCR. Review in genomic context your sequence for sequence tagged sites (STSs).
FLcDNA Projects. View Full-Length cDNA Project summaries and links to resources.
GeneRIF. Gene References into Function. HomoloGene. View calculated and curated homologs for plant and animal genes.
Map Viewer. View and navigate among NCBI's suite of genome-specific Map Viewer and BLAST pages.
RefSeq. Reference sequences of mRNAs and proteins.
Trace Archive. Collection of raw sequence traces from various sequencing projects.
UniGene. Organization of transcribed sequences into gene-based clusters.
UniSTS. A non- redundant collection of STSs with links to maps, primers, and sequences.

FTP sites:
dbSNP
LocusLink
RefSeq
UniGene
Zebrafish Maps


Welcome to the Zebrafish Genome resources page. This homepage will bring together information on NCBI and community zebrafish-related resources including sequence, mapping, and clone information.
zebrafish
Bone Growth Visualization
Du et al. (2001)
Visualizing Normal and Defective Bone Development in Zebrafish Embryos Using the Fluorescent Chromophore Clacein. Developmental Biology 238:239-246.
Courtesy of:
The Zebrafish CD Exchange Project's: The Living Laboratory

This month in...
PubMed
GenBank

Upcoming Meeting:
4th European Fish Genetics and Development Meeting
Dresden, Germany
July 13-16, 2005

What's New

August 2004
Genome Resources Workshop
Slides and Tutorial

  • view or download
    workshop slides or tutorial
  • navigate to NCBI, ZFIN or Sanger
    resources by provided links

    NCBI, ZFIN and the Sanger Institute presented a joint workshop on genome resources at the 2004 Zebrafish Development and Genetics Meeting.

    April 2004
    MGH Primer Selection Tool

    Identify simple sequence repeat (SSR) markers/primer pairs in Sanger's finished BACs or the Zv3 Assembly supercontigs.

    February 2004
    ZF-MODELS Project

    launched to study zebrafish models for human development and disease.

    January 2003
    Zebrafish Full-Length cDNAs
    Zebrafish Gene Collection (ZGC) has deposited over 3000 clones in GenBank.
    Set of all ZGCs in GenBank


    January 2003
    Danio rerio added to EBI's
    Genome Monitoring Table.


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    Questions or Comments?
    Write to the NCBI Service Desk

  • Community Resources
  • ZFIN
  • Zebrafish Gene Collection (ZGC)
  • Trans-NIH Zebrafish Initiative
  • WashU-Zebrafish Genome Resources Project
  • Zebrafish International Resource Center
  • Tübingen Zebrafish Stockcenter

    Maps and Sequencing
  • The Danio rerio Sequencing Project
  • Zebrafish Genome Fingerprinting Project
  • RHdb

    Tools

  • SSAHA
  • Zon Lab Comparative Genomics BLAST
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