NCBI
»
UniGene
»
Danio rerio
PubMed
Protein
Genome
Structure
PopSet
Taxonomy
OMIM
Search
PubMed
Protein
Nucleotide
Structure
Genome
PopSet
OMIM
Taxonomy
Books
ProbeSet
3D Domains
UniSTS
Domains
SNP
Journals
HomoloGene
UniGene
Limits
Index
History
Details
Danio rerio: UniGene Build #78
Lineage:
cellular organisms;
Eukaryota;
Fungi/Metazoa group;
Metazoa;
Eumetazoa;
Bilateria;
Coelomata;
Deuterostomia;
Chordata;
Craniata;
Vertebrata;
Gnathostomata;
Teleostomi;
Euteleostomi;
Actinopterygii;
Actinopteri;
Neopterygii;
Teleostei;
Elopocephala;
Clupeocephala;
Otocephala;
Ostariophysi;
Otophysi;
Cypriniphysi;
Cypriniformes;
Cyprinoidea;
Cyprinidae;
Rasborinae;
Danio;
Danio rerio
Sequences Included in UniGene
Known genes are from GenBank 05 Oct 2004
ESTs are from dbEST through 05 Oct 2004
15,211
mRNAs
0
Models
117
HTC
98,429
EST, 3'reads
366,088
EST, 5'reads
27,784
EST, other/unknown
507,629
total sequences in clusters
Build Method: Transcript Based
Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.
More...
Final Number of Clusters (sets)
23,471
sets total
7,070
sets contain at least one mRNA
114
sets contain at least one HTC sequence
23,153
sets contain at least one EST
6,753
sets contain both mRNAs and ESTs
Histogram of cluster sizes for UniGene Dr build 78
Cluster Size
Number Of Clusters
4,097-8,192
6
2,049-4,096
10
1,025-2,048
23
513-1,024
58
257-512
127
129-256
309
65-128
709
33-64
1618
17-32
2616
9-16
3116
5-8
3034
3-4
3172
2
4034
1
4639
Zebrafish (Danio rerio) has been used since the late 1800s as a model system for genetic analysis and vertebrate development.
UniGene Links
Library Browser
DDD
Query Tips
FAQ
Other Links
LocusLink
HomoloGene
dbEST
Trace Archive
BLAST
ZGC cDNA Clones
Questions or Comments?
E-mail the NCBI Help Desk
National Center for Biotechnology Information
U.S. National Library of Medicine
National Institutes of Health
Disclaimer |
Freedom of Information Act |
Privacy Policy