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Danio rerio:  UniGene Build #78

 
Lineage:  cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Elopocephala; Clupeocephala; Otocephala; Ostariophysi; Otophysi; Cypriniphysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio; Danio rerio

Sequences Included in UniGene
Known genes are from GenBank 05 Oct 2004
ESTs are from dbEST through 05 Oct 2004

  15,211 mRNAs
  0 Models
  117 HTC
  98,429 EST, 3'reads
  366,088 EST, 5'reads
  27,784 EST, other/unknown
  507,629 total sequences in clusters

Build Method: Transcript Based

Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.
More...


Final Number of Clusters (sets)
  23,471 sets total
  7,070 sets contain at least one mRNA
  114 sets contain at least one HTC sequence
  23,153 sets contain at least one EST
  6,753 sets contain both mRNAs and ESTs

Histogram of cluster sizes for UniGene Dr build 78

Cluster Size  Number Of Clusters
4,097-8,192 6  
2,049-4,096 10  
1,025-2,048 23  
513-1,024 58  
257-512 127  
129-256 309  
65-128 709  
33-64 1618  
17-32 2616  
9-16 3116  
5-8 3034  
3-4 3172  
2 4034  
1 4639  
Zebrafish (Danio rerio) has been used since the late 1800s as a model system for genetic analysis and vertebrate development.

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