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PubMed Entrez BLAST OMIM Taxonomy Structure

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VAST Search

VAST Search is NCBI's structure-structure similarity search service. It compares 3D coordinates of a newly determined protein structure to those in the MMDB/PDB database. VAST Search computes a list of structure neighbors that you may browse interactively, viewing superpositions and alignments by molecular graphics.

  • To search for neighbors of a newly determined structure:
    • If you used X-PLOR to generate your PDB file

    • <CLICK HERE>.

    • If your have a CNS deposit file
      <CLICK HERE>.


    • If your PDB file has Brookhaven naming conventions
      <CLICK HERE>.
  • To view results of an earler search go <CLICK HERE>.

  • To view VAST neighbors of a structure already in MMDB/PDB  <CLICK HERE>.
 
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