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VAST Search is NCBI's structure-structure similarity search service. It compares 3D coordinates of a newly determined protein structure to those in the MMDB/PDB database. VAST Search computes a list of structure neighbors that you may browse interactively, viewing superpositions and alignments by molecular graphics.

• To search for neighbors of a newly determined structure:

• If you used X-PLOR to generate your PDB file

<CLICK HERE>.


• If your have a CNS deposit file
  <CLICK HERE>.



• If your PDB file has Brookhaven naming conventions
  <CLICK HERE>.

• To view results of an earler search go <CLICK HERE>.
  
  
• To view VAST neighbors of a structure already in MMDB/PDB  <CLICK HERE>.