Project Overview

Rice Genome Facts

	Rice GenBank Entries
	Rice Publications
	Rice Gene Statistics

Sequencing and
In Silico Mapping

	Rice BAC Sequencing
	Genetic Markers to BAC Ends
	IRGSP Progress: Genetic Markers to BACS
	Tos17 Search Page
	Maize Markers to Rice BACS & Rice Markers
	Wheat Markers to Rice BACS & Rice Markers

Annotation and Informatics

	Annotated rice pseudomolecules
	Rice distributed annotation system (DAS)
	Whole Automated Genome Annotation Database
	TIGR Curated Rice Annotation DB -Chr 3 & 10
	Plant Ortholog Database
	Rice Genomic DNA Alignments with TIGR Gene Indices
	Oryza Repeat Database
	Rice Gene Index (OsGI)
	Rice Genome Data Extractor

Search

	Gene Name Search
	Locus Search
	Sequence Search
	HMM Search

Download Sequences

FAQ

The TIGR Rice Genome Project

• What's new at the TIGR Rice Genome Project

  • Update of the TIGR Rice Genome Annotation Database and Release of Version 2 of the Pseudomolecules

  • Data Extractor Tool now available for the TIGR Rice Genome Annotation Data

    Click here for more information.
    

• Sequencing and In Silico Mapping

  • Rice BAC Sequencing
    
  • Anchoring of Rice BAC Clones to the Rice Genetic Map in Silico
    
  • Progress of IRGSP: Mapping of BAC/PAC Sequences to the Genetic Map
    
  • In silico mapping of Tos17 insertion in the rice genome
    
  • In silico mapping of maize genetic markers to rice BACs and rice markers
    
  • In silico mapping of wheat genetic markers to rice BACs and rice markers
    

• TIGR Rice Annotation and Informatics

  • Release of pseudomolecules with annotation for the 12 rice chromosomes
    
  • Rice Distributed Annotation System (DAS)
    
  • Whole Genome Automated Annotation Database
    
  • Rice Curated Annotation DB-Chromosomes 3 & 10
    
  • TIGR Plant Ortholog Database
    
  • Global Alignment of Plant Transcripts with Rice Genomic DNA
    
  • Oryza Repeat Database
    
  • Rice Gene Index (OsGI)
    
  • TIGR Rice Genome Data Extractor

• A FAQ for this site
  Currently contains information on ordering BAC clones, EST clones, and map information.

• Rice links
  Links to Information on the Rice Genome sequencing project available from other sites.

• The TIGR Rice Team