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PubMed Help
Last updated: September 3, 2004
PubMed Searches |
PubMed searching is easy: just enter search terms in the query box and press the Enter key or click Go. The Features bar directly beneath the query box provides access to additional search options. The PubMed query box and Features bar are available from every screen, so you don't need to return to the homepage to enter a new search.
You may enter one or more terms (e.g., vitamin c common cold) in the query box and PubMed automatically combines (ANDs) significant terms together using automatic term mapping. The terms are searched in various fields of the citation. Your search may include Boolean operators.
Once you click Go, PubMed will display your search results. The query box displays your search terms as you entered them.
You can modify your current search by adding or eliminating terms in
the query box or in Details. If you applied
Limits,
the check box next to Limits will be marked and a listing of your limit
selections will be displayed. To turn off the existing limits, click
on the check box to remove the check before running your next search.
Author |
Note:
Journal Titles |
Note:
Automatic Term Mapping |
1. MeSH Translation Table
The MeSH Translation Table contains MeSH
Terms, the See-Reference mappings (also known as entry terms) for MeSH
terms, MeSH Subheadings,
Publication Types,
Pharmacologic Action terms, terms derived
from the Unified Medical Language System (UMLS)
that have equivalent synonyms or lexical variants in English, and the Supplementary
Concept (Substance) Names and their synonyms. If a match is found
in this translation table, the term will be searched as MeSH (which includes the
MeSH term and any specific terms indented under that term in the
MeSH hierarchy),
and as a Text
Word. For example, if you enter vitamin h in the query box, PubMed
will translate this search to: ("Biotin"[MeSH Terms] OR vitamin h[Text
Word]). Vitamin H is an entry term for the MeSH term, Biotin.
If you enter a MeSH Term that is also a Pharmacologic Action Term PubMed will search the term as [MeSH Terms], [Pharmacologic Action], OR [Text Word].
Note:
Click on Details to verify how your terms are translated. If you want to report a translation that does not seem accurate for your search topic, please e-mail the information to custserv@nlm.nih.gov2. Journals Translation Table
3. Author Index
If the phrase is not found in the above tables and is not a single term, PubMed checks the Author Index
for a match.
If no match is found?
PubMed breaks apart the phrase and repeats the above automatic term
mapping process until a match is found. If there is no match, the individual
terms will be combined (ANDed) together and searched in All Fields.
See also:
Truncation (finding all terms that begin with a given text string) |
Wildcard search for term* used only the first 600 variations. Lengthen the root word to search for all endings.
Note:
Truncation turns off automatic term mapping and the automatic explosion of a MeSH term. For example, heart attack* will not map to the MeSH term, Myocardial Infarction, or include any of the more specific terms, e.g., Myocardial Stunning; Shock, Cardiogenic.
Phrase Searches (specifying a phrase in a search) |
Note:
Additional Search Rules |
search term [tag] BOOLEAN OPERATOR search term [tag]
Examples of Boolean Search Statements:
Find citations on DNA that were authored by Dr. Crick in 1993.
dna [mh] AND crick [au] AND 1993 [dp]
Find articles that deal with the effects
of heat or humidity on multiple sclerosis, where
these words appear in all fields in
the citation.
(heat OR humidity) AND multiple sclerosis
Find English language review articles that discuss the treatment of asthma in preschool children.
asthma/therapy
[mh] AND review [pt] AND child, preschool [mh] AND
english [la]
Find citations about arthritis excluding the Publication Type Letter.
arthritis NOT letter [pt]
Possessive Names as Part of Terms
If you are searching for a term named for an individual, be sure to
include the full name of the term, e.g., crohn's disease or coon's technique.
The possessive form is not required, i.e., crohn disease, can be used.
For Text Word searching, use the non-possessive form of the term with the [tw] search
tag, e.g., hodgkin[tw].
Search Field Qualification
Terms can be qualified using PubMed's Search
Field tags.
To enter a date range, insert a colon (:) between each date, e.g., 1993:1995 [edat] or 1997/01:1997/06 [edat].
Note:
Date range searching for citations that include both a print and electronic date of publication will only be retrieved by the print date of publication therefore date searches for a full year should be entered as 2000[dp] rather than 2000:2000[dp].
PubMed's Date Fields:
Date of Publication [DP]
Entrez Date [EDAT] The date the citation
first entered PubMed.
MeSH Date [MHDA] The date the citation
was indexed with MeSH terms.
Date ranging is also available from the `Limits screen.
Subsets |
Citations to articles on specialized topics. The following subject subsets are available: AIDS, Bioethics, Cancer, Complementary Medicine, History of Medicine, Space Life Sciences, Systematic Reviews, and Toxicology. Each uses its own specialized search strategy to aid in the retrieval of citations on these topics. Subject subsets (except Systematic Reviews) may be selected from the Subsets pull-down menu in Limits. Systematic Reviews can be searched from the Clinical Queries screen. Alternatively, each subject subset can be searched using the respective search value of aids, bioethics, cancer, cam, history, space, systematic, or tox and the [SB] search tag.
Example: asthma AND cam [sb]
Note: Do not confuse the subject subsets for AIDS, Bioethics, Cancer, History of Medicine, and Space Life Sciences with the Journal/Citation Subsets for the same topics, i.e., jsubsetx, jsubsete, jsubsetq, and jsubsets.
Citations include one of the following status tags next to the PMID to indicate the stage of processing:
The MEDLINE subset can be selected from the Subset pull-down menu in Limits. The citation status subsets listed above can be searched using the respective search values of publisher, in process, medline, pubmednotmedline, and oldmedline, with the [SB] search tag, e.g., n engl j med AND medline [sb]. To retrieve the total number of PubMed citations use the search: all [sb].
Citations of articles from specialized journals or of articles on specialized topics in other journals. Values used for searching are listed below, followed by an explanation. Some subsets are closed and no longer being assigned to current data.
AIM | Abridged Index Medicus is a list created 20 years ago of 120 core clinical English language journals. Corresponds to "Core clinical journals" subset in Limits. |
D | dentistry journals |
E | citations from bioethics journals or selected bioethics citations from other journals |
H | health administration journals, non-Index Medicus |
IM | Index Medicus journals |
K | consumer health journals, non-Index Medicus |
N | nursing journals |
Q | history of medicine journals and selected citations from other journals |
S | citations from space life sciences journals and selected space life sciences citations from other journals |
T | health technology assessment journals, non-Index Medicus |
X | AIDS/HIV journals (selected citations from other journals 1980-2000) |
To search for a Journal/Citation subset use jsubset?, where ? stands for the subset value, listed above, e.g., neoplasms AND jsubsete. The Journal/Citation subset does not use a search tag.
Citations with links to full-text in PubMed Central (PMC). This subset may be selected from the Subsets menu in Limits or it may be searched as: pubmed pmc local[sb], e.g., protein p53 AND pubmed pmc local[sb] PMC has relaxed the requirement that full-text be viewable free at PMC and instead provides a link to the journal's Web site to view the free full-text article. To include all PMC citations in a PubMed search, use the following subset value: pubmed pmc[sb].
To search for citations with abstracts, use the value 'hasabstract', e.g., neoplasms AND hasabstract
Note:
Ahead of Print Citations
Publishers may submit citations for articles that appear on the Web in advance
of the journal issue's release.
Following publication of the completed issue, the date an article was published
electronically is retained on these citations, e.g.
Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):3925-9. Epub 2003 Mar 24.
Search for the citations with 'pubstatusaheadofprint', e.g., pubstatusaheadofprint AND gene
Cookies |
What is a "cookie"?
A "cookie" is information sent by a Web site server (e.g., PubMed)
to your computer. In the case of PubMed, it is information about your interactions
that may be needed later to perform a function. Cookies allow PubMed to
provide more interactive features such as Preview/Index, Clipboard, History,
and the Cubby. Cookies placed by PubMed are removed from your computer
after a set time period. If you are interested, there are many Web sites that provide information
about cookies.
How can I tell if my system accepts
cookies?
Cookie-dependent features of PubMed include Preview/Index, History,
Clipboard, and the Cubby. To use these features, your system must be able
to accept cookies. If you still have problems using cookie-dependent features
of PubMed even after enabling cookies, possible reasons may include:
Enabling Cookies
Given the number of possible combinations of computer platforms, operating
systems, and Web browser versions, we are unable to provide instructions
for enabling cookies on your computer. Consult your browser's Help for
information on enabling cookies.
Features Bar |
Limits |
Note:
If you select a limit and either run a search or move to another screen, a check will appear in a box next to Limits on the Features bar to indicate that limits have been selected. If you then run a search, the limits in effect will appear in the yellow bar above the Display button. To turn off the limits before you run your next search, click on the box to remove the check.
Field Selection
You may limit your search terms to a specific search field. All Fields
is the default for searching. To select a specific field, click the All
Fields pull-down menu and select a search field.
See also:
Only Items with Abstracts
You may limit your retrieval to only citations that contain an abstract
by using the check box next to only items with abstracts.
Most citations in PubMed to articles published prior to 1975 do not include abstracts.
All citations in PubMed are for journal articles. However, you may limit your retrieval based on the type of material the article represents (e.g., Clinical Trials or Review articles). The Publication Types pull-down menu contains a list of frequently searched publication types. If you do not make a selection, PubMed will not restrict to any particular publication type. The available selections are:
If you use the Publication Types pull-down menu to select a search field, your retrieval will be limited to MEDLINE citations. The "in process" and "supplied by publisher citations" will be excluded because they have not yet completed the indexing process and will not include a Publication Type.See also:
To select a language, click on the Languages pull-down menu and select one of the following languages:
If you use the Ages pull-down menu to select a search field, your retrieval will be limited to MEDLINE citations. The "in process" and "supplied by publisher" citations are will be excluded because they have not yet completed the indexing process and do not carry these data.Gender
Note:
If you use the Gender pull-down menu to select a search field, your retrieval will be limited to MEDLINE citations. The "in process" and "supplied by publisher" citations are will be excluded because they have not yet completed the indexing process and do not carry these data.Human or Animal
Note:
If you use the Human or Animal pull-down menu to select a search field, your retrieval will be limited to MEDLINE citations. The "in process" and "supplied by publisher" citations are will be excluded because they have not yet completed the indexing process and do not carry these data.Subsets
When PubMed displays your search results, the citations are displayed in descending Entrez Date order, i.e., last in, first out. If you do not specify a date range, PubMed searches for citations to articles back to 1966.
Preview/Index |
To search for terms from specific search fields, select a search field from the All Fields pull-down menu and enter a term in the text box. Click AND, OR, or NOT to add the term to the query box with the appropriate search field tag, or click Preview to see the number of results under "Most Recent Queries.".
The available Boolean operators are:
Intersection (AND) - only those citations that
contain selected terms.
Union (OR) - citations that contain at least
one of the selected terms.
Difference (NOT) - exclude citations with
the selected term.
You can also use the Index to select from a list of terms within a search field. Select a search field from the All Fields pull-down menu, enter a term in the box, and click Index. PubMed displays an alphabetic list of terms in the Index for the selected search field. The number of citations in PubMed that contain the term appears in parentheses to the right of the term. You can scroll up or down the list, or click Up or Down to move along in the Index.
Highlight a term by clicking on it. Then click the appropriate operator, AND, OR, NOT. The selected term will be added to the query box. To OR together multiple terms from an Index display and then add (or AND) them to your search, click on each term while holding down the Ctrl key (PC) or the Command key (Mac). When all of the terms you want are highlighted, click the connector AND to add the terms (ORed together) to the query.
You may then continue to add additional terms from other search fields. Once your strategy is complete, click Preview to see the number of results, or click Go to display the citations.
For example, to see the MeSH Terms beginning with chickenpox:
Note:
History |
Click on the linked search statement number to open the options menu that includes Boolean operators to AND, OR or NOT your search to the query box, delete the search from History, re-run the search or display the search details.
You can also combine searches or add additional terms to an existing search by using the pound sign (#) before the search number, e.g., #2 AND #6, or #3 AND (drug therapy OR diet therapy). Once you have entered a revised search in the query box, click Go to view the search results. Click Clear History to remove all searches from the History screen and the Preview/Index screen.
Note:
Clipboard |
Save from the Clipboard
Citations are initially displayed in the summary format in the order
they were added. Use Sort to change the order.
You can select all or individual citations to display or save in one of
the citation display formats. To save citations
choose File from the Send to pull-down menu and then click the Send to button.
Note:
Your results may be on more than one page. PubMed will retain your selections from all pages of your results. To mark specific citations to save, click on the check box to the left of each citation and continue to page through your results. Select File from the Send to menu to save all the selected citations to a file.See Also: Order Documents in the Clipboard
Delete Citations
from the Clipboard
To mark citations
for deletion in the Clipboard, click on the check box to the left of the citation and
select
Clip Remove from the Send to menu, click Send to. To empty your entire Clipboard, do not mark any of the
citations; select Clip Remove from the Send to menu, and click Send to.
Details |
Edit Your Search
The PubMed Query box shows the actual search and syntax used
to run the search. Beneath this box, the Result number hyperlink displays
the total number of citations for the search. To return to
the current search results screen, click this link or use the "Back" function
of your Web browser. The Translations area details how each term was translated
using PubMed's search rules and syntax, and the User Query area shows the
search terms as you entered them in the query box.
To edit the search in the PubMed Query box, click in the box to add or delete terms and then click Search.
Save a Search
From Details, use the URL button to display the current
search as a URL and then bookmark the URL for future use.
To save a search:
Searches that were created using a search statement number in History (e.g., #1 OR #2 AND human[mh]) can not be saved using the URL feature because search statements are lost when History expires.
Documents |
Display |
You can use the Limits page Entrez Date pull-down menu to limit
your retrieval to a pre-selected range of dates or use the Entrez Date
search field tag to specify a single date or date
range. The Entrez Date is only displayed on the MEDLINE display format.
PubMed citations are initially displayed in a summary format. Documents
can be viewed in one of six other formats: Summary (default), Brief, Abstract,
Citation, MEDLINE, ASN.1, and XML. You can choose to display other formats by:
Display Formats
Your citations can be displayed in any of the following formats.
See Search Field Descriptions
for an explanation of the fields.
Summary - this format may include: Authors, Corporate Authors, Title, Journal source,
Review Publication Type, language if the article is not in English, "No abstract available" notation, PMID,
Comment/Correction links, and citation
status. Summary also displays icon links next to each citation to indicate
whether or not the citation includes an abstract, or when the full article is
available free in PubMed Central or
elsewhere.
No Abstract | Abstract | |||
Full-text article available free in PubMed Central. | ||||
Free full-text article available |
Brief - authors, first 30 characters of the Title, and PMID.
Abstract - this format may include: Journal source, Comment/Correction links, Title, language if article is not in English, Authors, Corporate Author, Author Affiliation, Abstract (if present), Publication Types (except for the Journal Article publication type), Personal Name as Subject, PMID, and citation status.
Citation - this format may include: Journal Source, Comment/Correction links, Title, language if article is not in English, Authors, Corporate Author, Author Affiliation, Abstract (if present), Publication Types (except for the Journal Article publication type), MeSH Terms, Personal Name as Subject, Chemical Substances, Secondary Source databank accession numbers, Grant numbers, PMID, and citation status.
MEDLINE - two-character tagged field format for the complete record. Use this format to download records into reference management programs.
ASN.1 - ASN.1 (Abstract Syntax Notation One) is an international standard used to achieve inter-operability between platforms, including computer-to-computer, pager-to-computer, and many other possible combinations.
XML - EXtensible Markup Language tagged format is a standard maintained by the World Wide Web Consortium (W3C). The XML standard defines a syntax used to create markup languages to specify information structures. PubMed XML output conforms to several DTDs. A document describing the MEDLINE XML data element descriptions is available.
UI List - use this format with either the Send to File or Text selections to list only PMIDs.
PubMed displays your search results in batches; the default is 20 citations per page. The Show pull-down menu allows you to change the number of citations displayed on a single page from 5 up to a maximum of 500 items. To do this:
Sort |
Send to |
Text
You may display citations as plain text without the sidebar menu and
toolbars by selecting Text from the Send to pull-down menu. To display citations
in a different format, choose the desired format from the display pull-down menu,
select Text and click Send to. To return to your results in PubMed, use your browser's
back button.
File
The PubMed File function creates a text file of your PubMed citations on
your computer.
You can save entire search results or selected citations. If you
don't select specific citations before selecting File and clicking on the Send
to button, you
will create a file on your computer that will contain the entire search
results. A confirmation box displays for more than 10,000 items.
When you save a file, your browser will prompt you where this file should be placed on your computer and also give you the opportunity to rename the file. You can also use Send to File to save citations collected from multiple searches when using the Clipboard feature.
Save Entire Search Results
Save Selected Citations from a Single Search
Note:
Import Citations into a Reference Management Program |
Clipboard
The Clipboard is used to temporarily collect citations for later action. To place an item in the Clipboard, click on the check box to the left
of the citation, select Clipboard from the Send to pull-down menu, and then
click the Send to button. Once you have added a citation to the Clipboard, the record number color
will change to green.
Note:
E-mail
To e-mail your results click on
specific citations or choose E-mail and then click Send to. You may e-mail up to
500 items. Options available include:
Format, Sort, HTML or
Text. In addition, you may enter a message that will be included with the
PubMed search results in the e-mail message. The e-mail page reflects settings
from the results page and can be modified.
After clicking the Mail button the system returns you to your results page and displays a message confirming that the e-mail message was sent. Your PubMed results will be sent from the NCBI automatic mail server, Sent by Entrez [nobody@ncbi.nlm.nih.gov] with a "Subject" of PubMed Search Results. Do not reply to this message. This is not a functioning customer service e-mail address.
Note:
If you choose HTML, your PubMed e-mail message displays as a PubMed results page and includes hyperlinks to Related Articles, LinkOut, and other PubMed features. The recipient’s e-mail program must be set for HTML view in order to properly view in HTML format.
Order
Order is an option on the Send to menu that allows you to order the full-text copy of an article from a library
in your area using the Order
Documents feature of PubMed.
Note:
Before using this program, you must establish an agreement with a Loansome Doc participating library. Local fees may apply. For information on the medical libraries in your area (or country) that can provide the Loansome Doc service, click on Order Documents from the PubMed sidebar menu, then Registration from the Loansome Doc Ordering System screen.
Once you have registered with Loansome Doc, you can order citations by clicking on the check box to the left of each citation. When you have finished marking your selections (you may move to other pages within your results), select Order from the Send to pull-down menu and click the Send to button. You may also use the Clipboard to collect items from multiple searches before ordering.
Note:
For some journals, the full-text of articles is available via a PubMed link to the publisher's Web site. Publisher links for the full-text of the article are displayed on the Abstract or Citation display. You may also choose LinkOut from the Links pull-down menu to the right of each citation. LinkOut is a PubMed feature that links to outside sources for the full-text of the article, e.g., a publisher's Web site, as well as to other resources such as biological databases and sequencing centers. User registration, a subscription fee, or some other type of fee may be required to access the full-text of articles in some journals.
Note:
Links |
Related Articles |
If you select Related Articles from the Display pull-down menu without selecting specific citations, PubMed will retrieve the related articles for citations displayed on the page. Use the ELink utility to retrieve related articles for large sets of citations.
Limits are NOT in effect when you use a Related Articles link. After linking on Related Articles, although the box next to Limits may be checked, there is no yellow bar displaying the Limits in effect.
You can, however, refine the list of Related Articles using PubMed's History feature. In History, you will see that the Related Articles retrieval is represented as "Link to PubMed from (PMID of document)". Use this Search number in a search. For example:
#3 AND english[la]
#14 AND 1999:2003[dp]
Keep in mind that the list you get with a Related Articles link is displayed in ranked order from most to least relevant. Refining the list removes the ranked order and may remove citations that are most relevant.
Cited in PMC - citations for articles cited by a full-text article in PubMed Central.
Cited in Books - citations for articles cited in the bibliography of an online Book.
Books |
In collaboration with book publishers, NCBI is adapting books for the Web and linking them to PubMed to provide background so that users can explore unfamiliar concepts found in search results. The Books link displays a facsimile of the abstract, in which some phrases are hypertext links. These phrases correspond to terms that are also found in the books available at NCBI. Clicking on hypertext links you to a list of book pages in which the phrase is found. You can also search the Books database. Select Books from the Search pull-down menu, enter a search in the query box, and click Go.
LinkOut |
LinkOut allows publishers, aggregators, libraries, biological databases, sequence centers, and other Web resources to display links to their sites on items from the Entrez databases. These links can take you to the provider's site to obtain the full-text of articles or related resources, e.g., consumer health information. There may be a charge to access the text or information. The current list of LinkOut providers is available.
A publisher's icon link may display on the Abstract and Citation display formats if they have electronically provided their citation data to PubMed. Links are only available for publishers that are participating in LinkOut; publishers are responsible for providing working links. Links to other providers appear on the LinkOut display format. To see the LinkOut format for a retrieved item, change the Display format to LinkOut, or choose LinkOut from the Links pull-down menu.
The LinkOut format displays links (if available) by broad categories (e.g., Literature) and then by subject categories, selected by the LinkOut provider. Full-text provider links also include the form of the article available (e.g., full-text PDF). Links with an asterisk indicate that the LinkOut provider requires a subscription, membership, or fee for access. LinkOut subsets include:
free full text[sb] - Citations that include a link to a free full-text article.
full text[sb] - Citations that include a link to a full-text article.
Use the Cubby to customize your LinkOut preferences to display only links of interest to you.
Broken Links
Links are supplied to us by the providers; corrections and changes
to links are made by the providers and are their responsibility. You or your librarian can send reports of problem links or questions about
electronic journal subscriptions directly to the provider. You can usually
find a contact link at the provider's Web site. Contact the Help
Desk if you need assistance finding this information.
NCBI Databases |
Protein - amino acid (protein) sequences
Nucleotide - DNA sequences (GenBank)
Structure - three-dimensional macromolecular structures
Genome - complete genome assemblies
Books - BookShelf online books
Domains - Conserved Domain Database (CDD)
Gene - genes defined by sequence or in the NCBI Map Viewer
GEO - Gene Expression Omnibus
HomoloGene - automated detection of homologs among eukaryotic gene sets
Journals - journals in Entrez
PMC - PubMed Central
OMIM - Online Mendelian Inheritance in Man - catalog of human genes and
genetic disorders
Taxonomy - organisms in Protein or Nucleotide
PopSet - population study data sets
3D Domains - domains from Entrez Structure
UniSTS - a unified, non-redundant view of sequence tagged sites (STS)
SNP - single nucleotide polymorphisms
UniGene - non-redundant gene oriented clusters
NCBI Web Site - NCBI Web site search
The Links pull-down menu uses JavaScript, which may cause problems for some browsers. To change the way the Links feature displays, include one of the following parameters in PubMed's URL, ( e.g., http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?linkbar=plain), listed below:
linkbar=plain Displays links as separate selections. Does not use JavaScript. linkbar=jsmenu3 Default menu. linkbar=popup Opens a small window with link selections. linkbar=menu Links display as a pull-down menu.
Cubby |
Registration |
Provide (make up) the following information, then click Register:
Forgot Your Password?
If you've forgotten your password, click "Help! I Forgot My Password".
In the Password Forgotten box, enter your User Name and click on Lookup.
Enter either your Mother's Maiden Name or your Pet's Name on the next screen.
Once this has been verified, the Cubby will assign you a new Password. Make a
note of this, as you will need it to Login to the Cubby and if you
want to change your password to something
you can easily remember.
Changing Your Password
Select Change Password from the Cubby Resources menu sidebar and enter
your old password and new password, then click Change.
Log Out
Click Log Out from the Cubby sidebar to Log Out. Your Login will remain
active for 12 hours, unless you Log Out.
Stored Searches |
Update a Stored Search
It is easy to check for new items since your last update.
Query = stored search.Details will not display your Cubby search after updating a Cubby search because three separate searches are run as explained above.
T1 = the date and time the search was last updated.
T2 = today's date and time.
1900/00/00 = the date that will include all citations. (Note: PubMed includes citations back to the early 1960s.)
[MHDA] = the search tag for the MeSH date. This field reflects the date MeSH terms were added to the citation. (Note: until MeSH terms are added, the MHDA value is the same as the EDAT.)
[EDAT] = the search tag for the Entrez date field. This field reflects the date the citation was added to PubMed.
[TIAB] = the search tag for words in the Title and Abstract fields.
Example: The stored search is dna repair. The search was last updated on 2000/07/01 at 9:30 a.m. Today's date and time is 2000/08/01 at 11:00 a.m.
Strategies that include the Search Field Tags AU, PS, IP, TA, LA, PG, TI, TIAB, or VI use the strategy: Query AND T1 : T2 [EDAT]
Strategies that include the Search Field Tags AD, FILTER, SB, RN, MAJR, MESH, PT, SI, SH, NM, or TW, or Tags from both lists, use the strategy: Query AND T1 : T2 [MHDA]
Delete Stored Search
Select the stored search(es) you want
to delete by clicking the check box next to the Cubby Search Name. Next, click
Delete Selected Searches.
You can select and delete multiple searches at a time.
LinkOut Preferences |
LinkOut is a service that provides links from items retrieved from Entrez databases to information providers. In PubMed, the link to the citation provider displays with the abstract and citation format of an item. All other links to providers from a retrieved item display on the LinkOut display page. Use Cubby LinkOut Preferences to customize which links display. Whenever you login to the Cubby, PubMed will display LinkOut providers according to your specifications.
Set your Preferences
You can change how provider links are displayed by adding an icon or
hiding a link from LinkOut.
Add Icon: Links to providers' Web sites can display on the fuller display formats (e.g., Abstract, GenBank) as icons. The Add Icon option controls which provider icons are displayed. The default is for only the citation provider and PubMed Central icons to be display with these formats.Provider CategoriesHide from LinkOut: This controls which provider links are displayed on the LinkOut display format. The default is for all the provider links to display on the LinkOut display format for each citation.
All LinkOut Providers
This page lists all of the LinkOut providers in alphabetical order.
General LinkOut Notes
Document Delivery Services |
Outside Tool allows institutions to register a tool with NCBI to supplement LinkOut by providing a linking service from all PubMed citations back to that institution. When the outside tool parameter is set an icon displays on the Abstract and Citation format. The URL behind the icon is the base URL provided by the institution and the PMID of the displayed citation. Please send questions about this service to linkout@ncbi.nlm.nih.gov.
User Preferences |
To store an e-mail address:
Other Services |
Text Version |
Journals Database |
The Journals database can be searched using the journal title, the variant title as it appears in the NLM catalog, the MEDLINE abbreviation, the ISO (International Organization for Standardization) abbreviation - or words from these fields, the NLM ID (ID number for the NLM Catalog), and the print or electronic ISSNs (International Standard Serial Numbers). The database also includes the journals in several other Entrez databases.
Suggestions
In addition to the search results, this database
provides suggestions. The suggestions are based on an
algorithm that
compares letter combinations and
scores the relatedness of phrases included in a user's journal query. Click on a
journal under Suggestions to go directly to a specific journal record;
a new set of suggestions will display based on the selected journal. Suggestions are generated from an index (multi) that is a combination of three
indices from this database, i.e., journal title, MEDLINE abbreviation, and ISO
(International Organization for Standardization) abbreviation. This may result in
a journal being repeated in the list of suggestions.
Note:
Search Box
The Journals database provides a Search Box that can be used to build a PubMed
search. From any display format:
Links
The Journals database Links menu includes
the following links:
Other journal resources include:
MeSH Database |
Use the MeSH database to find MeSH terms including Subheadings, Publication Types and Pharmacological Actions - and build a PubMed search. The MeSH database can be searched by MeSH term, MeSH Entry Term, Subheading, Publication Type, or words within a MeSH Scope Note. Subheadings and Publication Types are included in the MeSH term searches.
MeSH database tutorials:
Suggestions
The database displays MeSH or Entry term suggestions
based on an algorithm that compares letter combinations in words. You can use the
MeSH term/Entry Term suggestion link to go directly to a record. A new set of
suggestions will be displayed based on the selected term.
Note:
Links
The MeSH database Links menu includes the following links:
Search Box
The MeSH database provides a
Search Box that can be used to build a PubMed search. From any display format:
Citation Matcher |
Clinical Queries |
Clinical Queries using Research
Methodology Filters
This specialized search query with built-in search research methodology
filters is intended for clinicians. Four study categories or filters are
provided: therapy, diagnosis, etiology, and prognosis. Two emphasis categories
or filters are provided: sensitive search (broad) - includes relevant articles but probably
some less relevant and specific search (narrow) - more precise articles, with less retrieval.
See the filter table
for details.
Systematic Reviews
This feature is provided to help health professionals locate systematic reviews
and similar articles. It combines your search term(s) with citations
identified as systematic reviews, meta-analyses, reviews of clinical trials,
evidence-based medicine, consensus development conferences, and guidelines.
Citations from journals specializing in clinical review studies are also
included. The resulting retrieval can be further refined using PubMed's
Limits
e.g., English language. (Note: outside of the Clinical Queries screen,
this subset can be combined directly with other search terms using AND
systematic [sb]. For example, lyme disease AND systematic [sb].)
Systematic Reviews uses a customized search
strategy. A list of related
sources on this topic is provided.
For More Assistance |
NLM Publications on PubMed
Tutorial
NLM
PubMed Training Manuals
NLM
Technical Bulletin
References |
Search Field Descriptions and Tags |
Comment Correction Type: | Search as: |
Comment in: | hascommentin |
Comment on: | hascommenton |
Erratum in: | haserratumin |
Erratum for: | haserratumfor |
Corrected and republished in: | hasrepublishedin |
Corrected and republished from: | hasrepublishedfrom |
Retraction in: | hasretractionin |
Retraction of: | hasretractionof |
Update in: | hasupdatein |
Update of: | hasupdateof |
Summary for patients in: | hassummaryforpatientsin |
Original Report in: | hasoriginalreportin |
Note:
The Entrez Date is not changed to reflect the date a publisher supplied record is elevated to in process or when an in process record is elevated to indexed for MEDLINE. Therefore, use caution when your strategy includes MeSH terms and a date or date range using the search field tag, [edat].
loall[sb] - Citations with LinkOut links in PubMed.
free full text[sb] - Citations that include a link to a free full-text article.
full text[sb] - Citations that include a link to a full-text article.Use Preview/Index to browse the LinkOut index. Select Filter from the All Fields pull-down menu, enter 'loprov' in the query box, click Index. PubMed displays an alphabetic list of the LinkOut providers. The 'losubj' and 'loattr' entries are links indexed by Subject Types and Attributes. The 'loftext' entries include a link to the online full-text of a journal citation.
Skilled subject analysts examine journal articles and assign to each the most specific MeSH terms applicable - typically ten to twelve. Applying the MeSH vocabulary ensures that articles are uniformly indexed by subject, whatever the author's words.
Notes on MeSH Terms and Major MeSH Topic search fields:
- To search the term only as a MeSH term, it must be qualified using the search field tags, e.g., [mh] for MeSH Terms or [majr] for MeSH Major Topic. A qualified term is checked against the MeSH Translation table and mapped to the appropriate MeSH term. Some concepts may map to two or more MeSH terms. To turn off this mapping, enclose the MeSH term in double quotes and qualify with [mh], e.g., "cold" [mh].
- MeSH terms are arranged hierarchically by subject categories with more specific terms arranged beneath broader terms. MeSH terms in PubMed automatically include the more specific MeSH terms in a search.
- MeSH/Subheading Combinations: To directly attach MeSH Subheadings, use the format MeSH Term/Subheading, e.g., neoplasms/diet therapy. You may also use the MEDLINE two letter MeSH Subheading abbreviations, e.g., neoplasms/dt. The [mh] tag is not required, however [majr] may be used, e.g., plants/genetics[majr]. Only one Subheading may be directly attached to a MeSH term. For a MeSH/Subheading combination, PubMed always includes the more specific terms arranged beneath broader terms for the MeSH term and also includes the more specific terms arranged beneath broader Subheadings. The broader Subheading or one of its indention's will be directly attached to the MeSH term or one of its indention's. For example, hypertension/therapy also retrieves hypertension/diet therapy; hypertension/drug therapy; hypertension, malignant/therapy; hypertension, malignant/drug therapy, and so on, as well as hypertension/therapy.
- To turn off the automatic inclusion of the more specific terms, use the syntax [field:noexp], e.g., hypertension [mh:noexp], or hypertension [majr:noexp], or hypertension/therapy [mh:noexp]. The latter example turns off the more specific terms in both parts, searching for only the one Subheading therapy attached directly to only the one MeSH term hypertension.
If parentheses are embedded in a MeSH term, replace the parentheses with a space and qualify with [mh] e.g., enter the MeSH term Benzo(a)pyrene as benzo a pyrene [mh].
MeSH terms can be selected for searching in the MeSH database and from Preview/Index.
Note:
Journals vary in the way the publication date appears on an issue. Some journals include just the year, whereas others include the year plus month or year plus month plus day. And, some journals use the year and season (e.g., Winter 1997). The publication date in the citation is recorded as it appears in the journal.
The SI field and the Entrez sequence database links are not related. The PubMed links to these databases are created from the reference field of the GenBank or GenPept flatfile. These references include citations that discuss the specific sequence presented in these flatfiles.
To search in combination with other terms, you must enter the search field tag, e.g., smith [au] AND (10403340 [uid] OR vaccines [mh]).
MeSH Subheadings |
Abnormalities | AB | Manpower | MA | |
Administration and Dosage | AD | Metabolism | ME | |
Adverse Effects | AE | Methods | MT | |
Agonists | AG | Microbiology | MI | |
Analogs and Derivatives | AA | Mortality | MO | |
Analysis | AN | Nursing | NU | |
Anatomy and Histology | AH | Organization and Administration | OG | |
Antagonists and Inhibitors | AI | Parasitology | PS | |
Biosynthesis | BI | Pathogenicity | PY | |
Blood Supply | BS | Pathology | PA | |
Blood | BL | Pharmacokinetics | PK | |
Cerebrospinal Fluid | CF | Pharmacology | PD | |
Chemical Synthesis | CS | Physiology | PH | |
Chemically Induced | CI | Physiopathology | PP | |
Chemistry | CH | Poisoning | PO | |
Classification | CL | Prevention and Control | PC | |
Complications | CO | Psychology | PX | |
Congenital | CN | Radiation Effects | RE | |
Contraindications | CT | Radiography | RA | |
Cytology | CY | Radionuclide Imaging | RI | |
Deficiency | DF | Radiotherapy | RT | |
Diagnosis | DI | Rehabilitation | RH | |
Diagnostic Use | DU | Secondary | SC | |
Diet Therapy | DH | Secretion | SE | |
Drug Effects | DE | Standards | ST | |
Drug Therapy | DT | Statistics and Numerical Data | SN | |
Economics | EC | Supply and Distribution | SD | |
Education | ED | Surgery | SU | |
Embryology | EM | Therapeutic Use | TU | |
Enzymology | EN | Therapy | TH | |
Epidemiology | EP | Toxicity | TO | |
Ethics | ES | Transmission | TM | |
Ethnology | EH | Transplantation | TR | |
Etiology | ET | Trends | TD | |
Genetics | GE | Ultrasonography | US | |
Growth and Development | GD | Ultrastructure | UL | |
History | HI | Urine | UR | |
Immunology | IM | Utilization | UT | |
Injuries | IN | Veterinary | VE | |
Innervation | IR | Virology | VI | |
Instrumentation | IS | |||
Isolation and Purification | IP | |||
Legislation and Jurisprudence | LJ |
Families of MeSH Subheading Explosions |
adverse effects | etiology | physiology |
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anatomy and histology |
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metabolism |
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statistics and numerical data |
chemistry |
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microbiology |
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organization and admin | surgery |
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therapeutic use |
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diagnosis |
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NLM Author Indexing Policy |
Until 1990, only five transliterated (Japanese and Cyrillic) authors were included on each citation. Since 1990, the first ten transliterated authors have been entered. Chinese ideograms for co-authors are not transliterated at all if the journal lists only a single transliterated name in the table of contents.
Publication Types |
Stopwords |
a | did | it | perhaps | these |
about | do | its | quite | they |
again | does | itself | rather | this |
all | done | just | really | those |
almost | due | kg | regarding | through |
also | during | km | seem | thus |
although | each | made | seen | to |
always | either | mainly | several | upon |
among | enough | make | should | use |
an | especially | may | show | used |
and | etc | mg | showed | using |
another | for | might | shown | various |
any | found | ml | shows | very |
are | from | mm | significantly | was |
as | further | most | since | we |
at | had | mostly | so | were |
be | has | must | some | what |
because | have | nearly | such | when |
been | having | neither | than | which |
before | here | no | that | while |
being | how | nor | the | with |
between | however | obtained | their | within |
both | i | of | theirs | without |
but | if | often | them | would |
by | in | on | then | |
can | into | our | there | |
could | is | overall | therefore |
MEDLINE Display Format |
Not all fields are searchable in PubMed. Information on
searching with tags is available at Search
Field Descriptions and Tags.
Tag | Name | Description |
AB | Abstract | Abstract |
AD | Affiliation | Institutional affiliation and address of the first author, and grant numbers |
AID | Article Identifier | Article ID values may include the pii (controlled publisher identifier) or doi (Digital Object Identifier) |
AU | Author | Authors |
CI | Copyright Information | Copyright statement |
CIN | Comment In | Reference containing a comment about the article |
CN | Corporate Author | Corporate author or group names with authorship responsibility |
CON | Comment On | Reference upon which the article comments |
DA | Date Created | Used for internal processing at NLM |
DCOM | Date Completed | Used for internal processing at NLM |
DEP | Date of Electronic Publication | Electronic publication date |
DP | Publication Date | The date the article was published |
EDAT | Entrez Date | The date the citation was added to PubMed |
EFR | Erratum For | Cites the original article needing the correction |
EIN | Erratum In | Reference containing a published erratum to the article |
FAU | Full Author Name | Full Author Names |
FIR | Full Investigator | Full investigator name |
FPS | Full Personal Name as Subject | Full Personal Name of the subject of the article |
GN | General Note | Supplemental or descriptive information related to the document |
GR | Grant Number | Research grant numbers, contract numbers, or both that designate financial support by any agency of the US PHS (Public Health Service) |
GS | Gene Symbol | Abbreviated gene names (used 1991 through 1996) |
IP | Issue | The number of the issue, part, or supplement of the journal in which the article was published |
IR | Investigator | NASA-funded principal investigator |
IRAD | Investigator Affiliation | Affiliation of NASA-funded principal investigator |
IS | ISSN | International Standard Serial Number of the journal |
JID | NLM Unique ID | Unique journal ID in NLM's catalog of books, journals, and audiovisuals |
LA | Language | The language in which the article was published |
LR | Last Revision Date | The date a change was made to the record during a maintenance procedure |
MH | MeSH Terms | NLM's controlled vocabulary |
MHDA | MeSH Date | The date MeSH terms were added to the citation. The MeSH date is the same as the Entrez date until MeSH are added |
OAB | Other Abstract | Abstract supplied by an NLM collaborating organization |
OCI | Other Copyright Information | Copyright owner |
OID | Other ID | Identification numbers provided by organizations supplying citation data |
ORI | Original Report In | Displays on Patient Summary. Cites original article associated with the patient summary |
OT | Other Term | Non-MeSH subject terms (keywords) assigned by an organization identified by the Other Term Owner |
OTO | Other Term Owner | Organization that provided the Other Term data |
OWN | Owner | Organization acronym that supplied citation data |
PG | Pagination | The full pagination of the article |
PHST | Publication History Status Date | History status date |
PL | Place of Publication | Journal's country of publication |
PMID | PubMed Unique Identifier | Unique number assigned to each PubMed citation |
PS | Personal Name as Subject | Individual is the subject of the article |
PST | Publication Status | Publication status |
PT | Publication Type | The type of material the article represents |
RF | Number of References | Number of bibliographic references for Review articles |
RIN | Retraction In | Retraction of the article |
RN | EC/RN Number | Number assigned by the Enzyme Commission to designate a particular enzyme or by the Chemical Abstracts Service for Registry Numbers |
ROF | Retraction Of | Article being retracted |
RPF | Republished From | Original article |
RPI | Republished In | Corrected and republished article |
SB | Subset | Journal/Citation Subset values representing various topic areas |
SFM | Space Flight Mission | NASA-supplied data space flight/mission name and/or number |
SI | Secondary Source Identifier | Identifies a secondary source that supplies information, e.g., other data sources, databanks and accession numbers of molecular sequences discussed in articles |
SO | Source | Composite field containing bibliographic information |
SPIN | Summary For Patients In | Cites a patient summary article |
STAT | Status Tag | Used for internal processing at NLM |
TA | Journal Title Abbreviation | Standard journal title abbreviation |
TI | Title | The title of the article |
TT | Transliterated / Vernacular Title | Non-Roman alphabet language titles are transliterated. |
UIN | Update In | Update to the article |
UOF | Update Of | The article being updated |
VI | Volume | Journal volume |
Grant Abbreviation and Institute Acronyms found in the ID Field in MEDLINE |
Two-character | ||
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Grant | Institute | Full Institute |
Abbreviation | Acronym | Name |
AA | NIAAA | National Institute on Alcohol Abuse and Alcoholism |
AG | NIA | National Institute on Aging |
AI | NIAID | National Institute of Allergy and Infectious Diseases |
AM1 | NIADDK | National Institute of Arthritis, Diabetes, and Digestive and Kidney Diseases |
AR | NIAMS | National Institute of Arthritis and Musculoskeletal and Skin Diseases |
AT | NCCAM | National Center for Complementary and Alternative Medicine |
CA | NCI | National Cancer Institute |
CO | NCI | Office of the Director |
CN | NCI | Division of Cancer Prevention and Control |
CB | NCI | Division of Cancer Biology and Diagnosis |
CP | NCI | Division of Cancer Etiology |
CM | NCI | Division of Cancer Treatment |
CL | CLC | Clinical Center |
CT | DCRT | Division of Computer Research and Technology |
DA | NIDA | National Institute on Drug Abuse |
DC | NIDCD | National Institute on Deafness and other Communication Disorders |
DE | NIDR | National Institute of Dental Research |
DK | NIDDK | National Institute of Diabetes and Digestive and Kidney Diseases |
DS | DS | Division of Safety, Office of Research Services |
ES | NIEHS | National Institute of Environmental Health Sciences |
EY | NEI | National Eye Institute |
GM | NIGMS | National Institute of General Medical Sciences |
HD | NICHD | National Institute of Child Health and Human Development |
HG | NCHGR | National Center for Human Genome Research |
HL | NHLBI | National Heart, Lung, and Blood Institute |
HV | NHLBI | Division of Heart and Vascular Diseases |
HB | NHLBI | Division of Blood Diseases and Resources |
HR | NHLBI | Division of Lung Diseases |
HI | NHLBI | Division of Intramural Research |
HO | NHLBI | Office of the Director |
HC | NHLBI | Division of Epidemiology and Clinical Applications |
LM | NLM | National Library of Medicine |
MH | NIMH | National Institute of Mental Health |
NR | NCNR | National Center for Nursing Research |
NS | NINDS | National Institute of Neurological Disorders and Stroke |
OD | NIH | Office of the Director |
OR | ORS | Office of Research Services |
RG | DRG | Division of Research Grants |
RR | NCRR | National Center for Research Resources |
RS2 | DRS | Division of Research Services |
TW | FIC | Fogarty International Center |
WH | WHI | Women's Health Initiative |
Two-character | ||
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Grant Abbreviation | Institute Acronym | Full Institute Name |
AH | BHP | formerly Division of Associated health Professions |
DH | BHP | formerly Division of Dentistry |
MB | BHP | Division of Disadvantaged Assistance |
NU | BHP | Division of Nursing |
PE | BHP | Division of Medicine |
SA | BHP | Division of Student Assistance |
ST | OHS | Office of Healthy Start |
FD | FDA | Food and Drug Administration |
BA | FDA |
Center for Biologics Evaluation and Research-
Bacterial Products |
BB | FDA |
Center for Biologics Evaluation and Research-
Biochemistry and Biophysics |
BC | FDA |
Center for Biologics Evaluation and Research-
Blood and Blood Product |
BD | FDA |
Center for Biologics Evaluation and Research-
Cytokine Biology |
BE | FDA |
Center for Biologics Evaluation and Research-
Product Quality Control |
BF | FDA |
Center for Biologics Evaluation and Research-
Virology |
BG | FDA |
Center for Biologics Evaluation and Research-
Transfusion |
BH | FDA |
Center for Biologics Evaluation and Research-
Hematology |
CE | NCIPC | National Center for Injury Prevention and Control |
CI | CID | Center of Infectious Diseases |
DP | NCCDPHP | National Center for Chronic Disease and Prevention
and
Health Promotion |
EH | NCEH | National Center for Environmental Health |
OH | NIOSH | National Institute for Occupational Safety and Health |
PS | CPS | Center for Prevention Services |
Two-character | ||
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Grant Abbreviation | Institute Acronym | Full Institute Name |
FP | OFP | Office of Family Planning |
MP | OMH | Office of Minority Health |
PG | OAPP | Office of Adolescent Pregnancy Programs |
AS | SAMHSA | Substance Abuse and Mental Health Services Administration |
OA | SAMHSA | Office of the Administrator, SAMHSA |
SM | CMHS | Center for Mental Health Services |
SP | CSAP | Center for Substance Abuse Prevention |
TI | CSAT | Center for Substance Abuse Treatment |
HS | AHCPR | Agency for Health Care Policy and Research |
Source: Information Systems Branch, Division of Research Grants, National Institutes of Health: July 1993